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snps
•
reset
1
vote
2
replies
2.6k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 24 months ago by
Arafat
• 0 • written 7.2 years ago by
rkdonthu
▴ 10
0
votes
1
reply
604
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
sekhwal
• 0
0
votes
0
replies
839
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.1 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
5.4 years ago
mictadlo
▴ 10
0
votes
6
replies
1.2k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
jebreen20
• 0
2
votes
5
replies
2.5k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
svlachavas
▴ 830
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 6.9 years ago by
Valerie Obenchain
★ 6.8k • written 6.9 years ago by
Lna
• 0
0
votes
1
reply
1.4k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
kredens
• 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
ben.ward
▴ 30
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
11 results • Page
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Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges
by
Michael Love
41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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