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SNPs
•
reset
1
vote
2
replies
2.7k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 2.2 years ago by
Arafat
• 0 • written 7.4 years ago by
rkdonthu
▴ 10
0
votes
1
reply
654
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.3 years ago by
James W. MacDonald
66k • written 2.3 years ago by
sekhwal
• 0
0
votes
0
replies
940
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.3 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.3k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
5.6 years ago
mictadlo
▴ 10
0
votes
6
replies
1.3k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 5.7 years ago by
James W. MacDonald
66k • written 5.7 years ago by
jebreen20
• 0
2
votes
5
replies
2.6k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 6.1 years ago by
Valerie Obenchain
★ 6.8k • written 6.1 years ago by
svlachavas
▴ 830
3
votes
4
replies
1.5k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
Lna
• 0
0
votes
1
reply
1.5k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 8.6 years ago by
Hervé Pagès
16k • written 8.7 years ago by
kredens
• 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
ben.ward
▴ 30
0
votes
4
replies
1.9k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.5 years ago by
vnyirongo
• 0
4
votes
3
replies
2.2k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.8 years ago by
Michael Lawrence
★ 11k • written 9.8 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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42k
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★ 1.1k
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to
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51k
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