Biostar SNPs

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195

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SNPs

2.3 years ago pltbiotech_tkarthi • 0

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504

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snps vcf venn diagram ggplot2

2.6 years ago mictadlo • 0

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543

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bioconductor molecular biology snps

updated 2.7 years ago by James W. MacDonald 57k • written 2.7 years ago by jebreen20 • 0

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1.0k

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motifbreakR vcf snps motif analysis

updated 3.1 years ago by Valerie Obenchain ★ 6.7k • written 3.1 years ago by svlachavas ▴ 780

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694

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 4.1 years ago by Valerie Obenchain ★ 6.7k • written 4.1 years ago by Lna • 0

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1.3k

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snps VCF

4.4 years ago rkdonthu ▴ 10

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917

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hsapiens snps indels

updated 5.7 years ago by Hervé Pagès 15k • written 5.7 years ago by kredens • 0

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801

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Biostrings SNPs alignment

updated 6.0 years ago by Hervé Pagès 15k • written 6.0 years ago by ben.ward ▴ 30

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1.2k

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gviz ideogram snps

updated 6.5 years ago by florian.hahne@novartis.com ★ 1.6k • written 6.5 years ago by vnyirongo • 0

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1.2k

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overlap snps granges iranges

updated 6.8 years ago by Michael Lawrence 11k • written 6.8 years ago by anastasiya-terskih ▴ 10

10 results • Page 1 of 1

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Comment: Problems with installation of 'phyloseq by Ina • 0

> install.packages("GenomeInfoDbData") --- Please select a CRAN mirror for use in this session --- Warning message: package ‘GenomeInfoDbD…

Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Kevin Blighe 3.2k

It is likely that you need to install the libraries on your Ubuntu OS outside R, via: apt-get install libhdf5-dev Note: use `sudo` if…

Comment: Combining HTSeq and RNA-SeQ for differential analysis by szomolay • 0

The disease data is from TCGA and the normal data is from GTEx. I am trying to do DE analysis and I am aware of the Xena portal where log2(…

Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k

What messages do you receive when you try to install the *GenomeInfoDbData* package?

Answer: derfinder model.matrix with limma or single base-level F-statistics analysis by Leonardo Collado Torres ▴ 890

Hi, Can you provide an example that breaks? The following R code works for me: ```R library("derfinder") set.seed(20210801) pheno …

Votes

A: DESeq2: multiple conditions design -- How to select subset comparisons from the

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Awards • All

Scholar to Leonardo Collado Torres ▴ 890