Bioconductor SNPs

Showing : SNPs • reset

vote

replies

3.2k

views

snps VCF

updated 3.0 years ago by Arafat • 0 • written 8.2 years ago by rkdonthu ▴ 10

votes

813

views

hierClust R SNPs clustering

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by sekhwal • 0

votes

replies

1.2k

views

SNPs

6.1 years ago pltbiotech_tkarthi • 0

votes

replies

1.5k

views

snps vcf venn diagram ggplot2

6.3 years ago mictadlo ▴ 10

votes

replies

1.5k

views

bioconductor molecular biology snps

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by jebreen20 • 0

votes

replies

3.0k

views

motifbreakR vcf snps motif analysis

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by svlachavas ▴ 840

votes

replies

1.8k

views

variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by Lna • 0

votes

1.7k

views

hsapiens snps indels

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by kredens • 0

votes

1.9k

views

Biostrings SNPs alignment

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by ben.ward ▴ 30

votes

replies

2.1k

views

gviz ideogram snps

updated 10.2 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.2 years ago by vnyirongo • 0

votes

replies

2.5k

views

overlap snps granges iranges

updated 10.6 years ago by Michael Lawrence ★ 11k • written 10.6 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

Recent ...

Replies

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

Awards • All

Scholar to Gordon Smyth 52k