Showing : SNPs • reset
1
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2
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3.6k
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Any tool to calculate Fst on haploid data?
snps VCF
updated 3.8 years ago by • 0 • written 9.0 years ago by ▴ 10
0
votes
1
reply
965
views
Error running hierClust
hierClust R SNPs clustering
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
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0
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1.6k
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How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
6.9 years ago pltbiotech_tkarthi • 0
0
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0
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1.7k
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vcf to venn diagram
snps vcf venn diagram ggplot2
7.1 years ago mictadlo ▴ 10
0
votes
6
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1.8k
views
Physical position to gene positions
bioconductor molecular biology snps
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
2
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5
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3.4k
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Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 7.6 years ago by ★ 6.8k • written 7.7 years ago by ▴ 840
3
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4
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2.1k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 8.6 years ago by ★ 6.8k • written 8.7 years ago by • 0
0
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1
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1.8k
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Extract SNPs and INDELs
hsapiens snps indels
updated 10.2 years ago by 16k • written 10.2 years ago by • 0
0
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1
reply
2.2k
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Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings SNPs alignment
updated 10.6 years ago by 16k • written 10.6 years ago by ▴ 30
0
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4
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2.5k
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Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by • 0
4
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3
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2.8k
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Overlap the snps
overlap snps granges iranges
updated 11.4 years ago by ★ 11k • written 11.4 years ago by ▴ 10
11 results • Page 1 of 1
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Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Answer: Bulk RNAseq analysis for by James W. MacDonald 68k
In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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