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Showing :
snps
•
reset
1
vote
2
replies
2.6k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 2.0 years ago by
Arafat
• 0 • written 7.2 years ago by
rkdonthu
▴ 10
0
votes
1
reply
608
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
sekhwal
• 0
0
votes
0
replies
840
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.1 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
5.4 years ago
mictadlo
▴ 10
0
votes
6
replies
1.2k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
jebreen20
• 0
2
votes
5
replies
2.5k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
svlachavas
▴ 830
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 6.9 years ago by
Valerie Obenchain
★ 6.8k • written 6.9 years ago by
Lna
• 0
0
votes
1
reply
1.4k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 8.4 years ago by
Hervé Pagès
16k • written 8.5 years ago by
kredens
• 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
ben.ward
▴ 30
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
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Replies
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
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