Showing : spillover • reset
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Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
flowcore spillover
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by ▴ 20
0
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6
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.6 years ago by • 0 • written 8.5 years ago by • 0
0
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3
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1.8k
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Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
6.5 years ago Samuel Ahuno • 0
1
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3
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Please help me verify my compensation and spill matrices makes sense ( openCyto package, in flowCore )
flow cytometry flowcore spillover compensation matrix
updated 6.9 years ago by ▴ 350 • written 6.9 years ago by ▴ 20
2
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3
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1.9k
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how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.3 years ago by ▴ 310 • written 5.3 years ago by • 0
3
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2
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1.8k
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How are autofluorescence values used in the spillover/compensate functions?
flowcore flow cytometry compensation spillover
updated 9.5 years ago by ▴ 150 • written 9.5 years ago by ▴ 20
1
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2
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1.5k
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Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls. - Spillover-flowcore
spillover compensation flowcore
8.4 years ago • updated 8.2 years ago davide.franchina ▴ 10
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spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
6.6 years ago Samuel Ahuno • 0
0
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0
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Error with spillover function
spillover
7.2 years ago justinyi10 ▴ 10
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Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus by James W. MacDonald 67k
I don't know what you mean by 'a pairwise comparison', but the two analyses are equivalent, except in the second analysis you want to do `t…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k
If you want to comment on an answer, please choose ADD COMMENT rather than ADD ANSWER, since you are not in fact adding an answer. ``` uni…
Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0
In fact, I used the BP ontology and I am using gene symbols rather than identifiers (IDs). Is there a way to verify how many genes from the…
Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k
In the other thread I pointed out that filtering on the p-value AND the logFC is fraught because you are mixing population parameter estima…
Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k
The way you are doing it includes all three ontologies. Unless you used "ALL" as the ontology, the number of genes annotated should be less…
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Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Answer: object 'hdac_targets' not found
Answer: object 'hdac_targets' not found
Answer: In the sesame package, what does the estimate output mean from testEnrichment()
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