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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
23 months ago
pl23
• 0
3
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4
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2.8k
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R session aborted: prcomp
Biobase
stats
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
Gero
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0
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1.7k
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
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computational biology
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9.2 years ago
Benilton Carvalho
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
9.3 years ago • updated 9.2 years ago
clif.duhn
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5
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6
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1.9k
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getting a matrix with diagonal =1
stats
updated 9.8 years ago by
Aaron Lun
★ 29k • written 9.8 years ago by
Angel
▴ 40
3
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3
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2.7k
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 10.2 years ago by
Ryan C. Thompson
★ 7.9k • written 10.2 years ago by
Jake
▴ 90
2
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2
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2.7k
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Memory management in R
stats
updated 10.6 years ago by
Martin Morgan
25k • written 10.6 years ago by
mrk.carty
▴ 30
2
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5
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2.0k
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Download the stats of Bioconductor
bioconductor
stats
10.8 years ago
Lluís Revilla Sancho
▴ 760
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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