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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
2.1 years ago
pl23
• 0
3
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4
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R session aborted: prcomp
Biobase
stats
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
Gero
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Job:
Two Post-doctoral Positions at University of Campinas
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computational biology
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9.4 years ago • updated 9.3 years ago
Benilton Carvalho
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0
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
9.4 years ago
clif.duhn
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5
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6
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1.9k
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getting a matrix with diagonal =1
stats
updated 10.0 years ago by
Aaron Lun
★ 29k • written 10.0 years ago by
Angel
▴ 40
3
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3
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2.7k
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 10.4 years ago by
Ryan C. Thompson
★ 7.9k • written 10.4 years ago by
Jake
▴ 90
2
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2
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2.8k
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Memory management in R
stats
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
mrk.carty
▴ 30
2
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5
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2.1k
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Download the stats of Bioconductor
bioconductor
stats
11.0 years ago
Lluís Revilla Sancho
▴ 760
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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