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3
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Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
2.0 years ago pl23 • 0
3
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4
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R session aborted: prcomp
Biobase stats
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
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Job: Two Post-doctoral Positions at University of Campinas
post-doc job stats computational biology Job
9.3 years ago Benilton Carvalho ★ 4.3k
0
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
9.4 years ago clif.duhn • 0
5
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getting a matrix with diagonal =1
stats
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 40
3
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3
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2.7k
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ribosome profiling analysis with different dispersions
deseq2 linear model ribosome profiling stats
updated 10.3 years ago by ★ 7.9k • written 10.3 years ago by ▴ 90
2
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2.7k
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Memory management in R
stats
updated 10.7 years ago by 25k • written 10.7 years ago by ▴ 30
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5
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Download the stats of Bioconductor
bioconductor stats
10.9 years ago Lluís Revilla Sancho ▴ 760
8 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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