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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
22 months ago
pl23
• 0
3
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4
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2.8k
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R session aborted: prcomp
Biobase
stats
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
Gero
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0
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
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stats
computational biology
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9.1 years ago
Benilton Carvalho
★ 4.3k
0
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0
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1.7k
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
9.2 years ago
clif.duhn
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5
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6
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1.8k
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getting a matrix with diagonal =1
stats
updated 9.7 years ago by
Aaron Lun
★ 29k • written 9.7 years ago by
Angel
▴ 40
3
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3
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2.7k
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 10.2 years ago by
Ryan C. Thompson
★ 7.9k • written 10.2 years ago by
Jake
▴ 90
2
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2
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2.7k
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Memory management in R
stats
updated 10.5 years ago by
Martin Morgan
25k • written 10.5 years ago by
mrk.carty
▴ 30
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5
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2.0k
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Download the stats of Bioconductor
bioconductor
stats
10.7 years ago
Lluís Revilla Sancho
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error
by
James W. MacDonald
68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
by
Gordon Smyth
53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
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Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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