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Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
23 months ago pl23 • 0
3
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4
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2.8k
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R session aborted: prcomp
Biobase stats
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
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Job: Two Post-doctoral Positions at University of Campinas
post-doc job stats computational biology Job
9.2 years ago Benilton Carvalho ★ 4.3k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
9.3 years ago • updated 9.2 years ago clif.duhn • 0
5
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1.9k
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getting a matrix with diagonal =1
stats
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 40
3
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3
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2.7k
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ribosome profiling analysis with different dispersions
deseq2 linear model ribosome profiling stats
updated 10.2 years ago by ★ 7.9k • written 10.2 years ago by ▴ 90
2
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Memory management in R
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updated 10.6 years ago by 25k • written 10.6 years ago by ▴ 30
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5
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Download the stats of Bioconductor
bioconductor stats
10.8 years ago Lluís Revilla Sancho ▴ 760
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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