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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
5 months ago
pl23
• 0
3
votes
4
replies
2.1k
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R session aborted: prcomp
Biobase
stats
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Gero
• 0
0
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0
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1.3k
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
job
stats
computational biology
Job
7.7 years ago • updated 7.6 years ago
Benilton Carvalho
★ 4.3k
0
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0
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1.4k
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.7 years ago
clif.duhn
• 0
5
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6
replies
1.4k
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getting a matrix with diagonal =1
stats
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
Angel
▴ 40
3
votes
3
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2.2k
views
ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 8.7 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
Jake
▴ 90
2
votes
2
replies
2.2k
views
Memory management in R
stats
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
mrk.carty
▴ 30
2
votes
5
replies
1.6k
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Download the stats of Bioconductor
bioconductor
stats
9.3 years ago
Lluís Revilla Sancho
▴ 730
8 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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