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subset
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How to subset a list of genes from a curated reference list of genes
R
subset
DifferentialExpression
updated 18 months ago by
Basti
▴ 780 • written 18 months ago by
Manav
• 0
3
votes
2
replies
1.3k
views
Import or Subset VCF PASS Variants
VariantAnnotation
subset
ScanVcfParam
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
Dario Strbenac
★ 1.5k
2
votes
5
replies
2.0k
views
How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
TxDb.Hsapiens.UCSC.hg38.knownGene
subset
TxDb object
5.0 years ago
Ruichao.Zeng
▴ 20
1
vote
2
replies
1.0k
views
Newbie question: how do I address a subset obtained by split()?
flowStats
newbie
split
subset
flowCore
5.7 years ago
yulia.chupalova
• 0
2
votes
1
reply
2.0k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
rbronste
▴ 60
0
votes
3
replies
2.6k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
9.2 years ago
alakatos
▴ 130
6 results • Page
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Replies
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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