Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
systempipeR
•
reset
14
votes
10
replies
3.7k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.5 years ago
Deleted
▴ 70
0
votes
7
replies
3.7k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.9 years ago
musa
▴ 10
0
votes
4
replies
1.6k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.6 years ago
Ugo Borello
▴ 340
0
votes
4
replies
1.4k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.0 years ago
A Gossner
▴ 50
2
votes
3
replies
2.1k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
abass.conteh
• 0
0
votes
3
replies
1.7k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
clarisbaby
• 0
0
votes
2
replies
1.2k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.7 years ago
rj.innet
• 0
3
votes
2
replies
1.0k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.2 years ago
appropiate
• 0
0
votes
2
replies
1.7k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.3 years ago by
Thomas Girke
★ 1.7k • written 8.3 years ago by
setarosd
• 0
1
vote
2
replies
2.0k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.6 years ago by
Thomas Girke
★ 1.7k • written 7.6 years ago by
alexandr.gopanenko
▴ 50
0
votes
2
replies
1.2k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.2 years ago
xuertowong
• 0
0
votes
2
replies
689
views
systemARGS not found
systempiper
5.8 years ago
kimberly.dickson
• 0
0
votes
2
replies
1.2k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.7 years ago
rj.innet
• 0
2
votes
2
replies
3.0k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
tina
• 0
0
votes
1
reply
1.1k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.7 years ago by
Thomas Girke
★ 1.7k • written 6.7 years ago by
tarun2
• 0
0
votes
1
reply
782
views
how to analysis chip-seq data
systemPipeR
updated 2.4 years ago by
dcassol
▴ 100 • written 2.4 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
512
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.2 years ago
appropiate
• 0
0
votes
0
replies
694
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.1 years ago
Mr.RB
▴ 20
18 results • Page
1 of 1
Recent ...
Replies
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Awards
• All
Popular Question
to
Robert Castelo
★ 3.3k
Popular Question
to
kevin.rue
▴ 350
Popular Question
to
Wei Shi
★ 3.6k
Popular Question
to
Gordon Smyth
50k
Popular Question
to
jovel_juan
▴ 30
Locations
• All
United States,
11 minutes ago
UPF, Barcelona, Spain,
17 minutes ago
WEHI, Melbourne, Australia,
26 minutes ago
United States,
53 minutes ago
Belgium,
1 hour ago
Traffic: 346 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6