Bioconductor SystempipeR

Showing : systempipeR • reset

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968

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systemPipeRdata systempipeR

2.1 years ago appropiate • 0

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500

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systemPipeRdata systemPipeR

2.1 years ago appropiate • 0

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750

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systemPipeR

updated 2.3 years ago by dcassol ▴ 100 • written 2.3 years ago by Bioinformatics ▴ 30

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2.9k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.2 years ago by Martin Morgan 25k • written 3.2 years ago by tina • 0

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673

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predORF systemPipeR ORF prediction

5.0 years ago Mr.RB ▴ 20

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3.7k

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systempiper

5.4 years ago Deleted ▴ 70

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runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

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1.2k

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systemPipeR rnaseq

5.6 years ago rj.innet • 0

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669

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systempiper

5.7 years ago kimberly.dickson • 0

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1.7k

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systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

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systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

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1.2k

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R edger systemPipeR

7.1 years ago xuertowong • 0

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2.1k

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by alexandr.gopanenko ▴ 50

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deseq2 systempiper Tutorial

7.8 years ago musa ▴ 10

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systempiper go term

7.9 years ago A Gossner ▴ 50

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.2 years ago by Thomas Girke ★ 1.7k • written 8.2 years ago by setarosd • 0

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deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

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C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0