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systemPipeR
•
reset
3
votes
2
replies
164
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
10 weeks ago
appropiate
• 0
0
votes
0
replies
92
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
11 weeks ago
appropiate
• 0
0
votes
1
reply
254
views
how to analysis chip-seq data
systemPipeR
updated 4 months ago by
dcassol
▴ 100 • written 4 months ago by
Bioinformatics
▴ 30
2
votes
2
replies
870
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 15 months ago by
Martin Morgan
25k • written 15 months ago by
tina
• 0
0
votes
0
replies
317
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
3.1 years ago
Mr.RB
▴ 20
14
votes
10
replies
1.9k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
3.5 years ago
jsalsager
▴ 40
0
votes
2
replies
741
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
3.7 years ago
rj.innet
• 0
0
votes
2
replies
557
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
3.7 years ago
rj.innet
• 0
0
votes
2
replies
345
views
systemARGS not found
systempiper
3.8 years ago
kimberly.dickson
• 0
0
votes
3
replies
751
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 4.1 years ago by
Aaron Lun
★ 27k • written 4.1 years ago by
clarisbaby
• 0
0
votes
1
reply
608
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 4.7 years ago by
Thomas Girke
★ 1.7k • written 4.7 years ago by
tarun2
• 0
0
votes
2
replies
800
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
5.2 years ago
xuertowong
• 0
2
votes
3
replies
1.4k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 5.5 years ago by
Thomas Girke
★ 1.7k • written 5.5 years ago by
abass.conteh
• 0
1
vote
2
replies
1.5k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 5.6 years ago by
Thomas Girke
★ 1.7k • written 5.6 years ago by
alexandr.gopanenko
▴ 20
0
votes
7
replies
2.4k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
5.9 years ago
musa
▴ 10
0
votes
4
replies
881
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
6.0 years ago
A Gossner
▴ 50
0
votes
2
replies
1.2k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 6.3 years ago by
Thomas Girke
★ 1.7k • written 6.3 years ago by
setarosd
• 0
0
votes
4
replies
1.1k
views
systemPipeR with DESeq2
deseq2
systemPipeR
7.6 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: performing the differential binding in ChIP-seq
by
ATpoint
★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA
by
Akira
• 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
Awards
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Scholar
to
Gordon Smyth
45k
Popular Question
to
andrebolerbarros
▴ 10
Scholar
to
James W. MacDonald
59k
Scholar
to
Guido Hooiveld
★ 3.2k
Scholar
to
Kevin Blighe
3.5k
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