Bioconductor SystemPipeR

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809

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systemPipeRdata systempipeR

21 months ago appropiate • 0

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414

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systemPipeRdata systemPipeR

21 months ago appropiate • 0

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628

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systemPipeR

updated 23 months ago by dcassol ▴ 100 • written 23 months ago by Bioinformatics ▴ 30

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2.7k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 2.8 years ago by Martin Morgan 25k • written 2.8 years ago by tina • 0

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576

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predORF systemPipeR ORF prediction

4.6 years ago Mr.RB ▴ 20

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3.3k

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systempiper

5.0 years ago jsalsager ▴ 70

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runCommandline systemPipeR bash

5.2 years ago rj.innet • 0

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systemPipeR rnaseq

5.2 years ago rj.innet • 0

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573

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systempiper

5.3 years ago kimberly.dickson • 0

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1.4k

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systempiper edger rna-seq

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by clarisbaby • 0

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968

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systempiper R batchjobs

updated 6.2 years ago by Thomas Girke ★ 1.7k • written 6.2 years ago by tarun2 • 0

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R edger systemPipeR

6.7 years ago xuertowong • 0

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1.9k

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.1 years ago by Thomas Girke ★ 1.7k • written 7.1 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 7.2 years ago by Thomas Girke ★ 1.7k • written 7.2 years ago by alexandr.gopanenko ▴ 40

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deseq2 systempiper Tutorial

7.4 years ago musa ▴ 10

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systempiper go term

7.5 years ago A Gossner ▴ 50

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 7.9 years ago by Thomas Girke ★ 1.7k • written 7.9 years ago by setarosd • 0

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deseq2 systemPipeR

9.1 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

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Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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