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systemPipeR
•
reset
3
votes
2
replies
809
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
21 months ago
appropiate
• 0
0
votes
0
replies
414
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
21 months ago
appropiate
• 0
0
votes
1
reply
628
views
how to analysis chip-seq data
systemPipeR
updated 23 months ago by
dcassol
▴ 100 • written 23 months ago by
Bioinformatics
▴ 30
2
votes
2
replies
2.7k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 2.8 years ago by
Martin Morgan
25k • written 2.8 years ago by
tina
• 0
0
votes
0
replies
576
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
4.6 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.3k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.0 years ago
jsalsager
▴ 70
0
votes
2
replies
1.1k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.2 years ago
rj.innet
• 0
0
votes
2
replies
1.0k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.2 years ago
rj.innet
• 0
0
votes
2
replies
573
views
systemARGS not found
systempiper
5.3 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.4k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
clarisbaby
• 0
0
votes
1
reply
968
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.2 years ago by
Thomas Girke
★ 1.7k • written 6.2 years ago by
tarun2
• 0
0
votes
2
replies
1.1k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
6.7 years ago
xuertowong
• 0
2
votes
3
replies
1.9k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.1 years ago by
Thomas Girke
★ 1.7k • written 7.1 years ago by
abass.conteh
• 0
1
vote
2
replies
1.9k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.2 years ago by
Thomas Girke
★ 1.7k • written 7.2 years ago by
alexandr.gopanenko
▴ 40
0
votes
7
replies
3.4k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.4 years ago
musa
▴ 10
0
votes
4
replies
1.3k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
7.5 years ago
A Gossner
▴ 50
0
votes
2
replies
1.5k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 7.9 years ago by
Thomas Girke
★ 1.7k • written 7.9 years ago by
setarosd
• 0
0
votes
4
replies
1.4k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.1 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Answer: RNASeq time course analysis, missing time points for control
by
Gordon Smyth
48k
You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…
Comment: DESeq2 - groups with biological replicates from the same patient
by
Oscar
• 0
Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…
Comment: DESeq2 test for synergistic vs additive effects
by
Jay
• 0
Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…
Comment: NCBI protein conversion to CDNA and NCBI gene (in R)
by
Gordon Smyth
48k
Continuation of https://support.bioconductor.org/p/9155428/
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Tim Peters
▴ 150
Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…
Votes
Answer: Confused about the CPM and TMM normalization in edgeR
Answer: Differential gene expression analysis
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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James W. MacDonald
64k
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Assa Yeroslaviz
★ 1.5k
Popular Question
to
Gordon Smyth
48k
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Endre Sebestyén
▴ 70
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