Bioconductor SystemPipeR

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1.3k

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systemPipeRdata systempipeR

2.9 years ago appropiate • 0

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672

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systemPipeRdata systemPipeR

2.9 years ago appropiate • 0

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1.1k

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systemPipeR

updated 3.1 years ago by dcassol ▴ 100 • written 3.1 years ago by Bioinformatics ▴ 30

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3.6k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by tina • 0

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879

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predORF systemPipeR ORF prediction

5.8 years ago Mr.RB ▴ 20

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4.3k

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systempiper

6.2 years ago Deleted ▴ 70

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runCommandline systemPipeR bash

6.4 years ago rj.innet • 0

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systemPipeR rnaseq

6.4 years ago rj.innet • 0

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854

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systempiper

6.5 years ago kimberly.dickson • 0

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2.1k

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systempiper edger rna-seq

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by clarisbaby • 0

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systempiper R batchjobs

updated 7.4 years ago by Thomas Girke ★ 1.7k • written 7.4 years ago by tarun2 • 0

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R edger systemPipeR

7.9 years ago xuertowong • 0

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2.4k

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R rnaseq tophat summarizeoverlaps systempiper

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 8.4 years ago by Thomas Girke ★ 1.7k • written 8.4 years ago by alexandr.gopanenko ▴ 50

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deseq2 systempiper Tutorial

8.6 years ago musa ▴ 10

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systempiper go term

8.7 years ago A Gossner ▴ 50

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1.9k

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 9.1 years ago by Thomas Girke ★ 1.7k • written 9.1 years ago by setarosd • 0

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deseq2 systemPipeR

10.3 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

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Comment: For some reason I can't update BiocManager to 3.20 by shepherl 4.1k

interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…

Comment: Overcoming confounding in batch effect correction by ATpoint ★ 4.6k

Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…

Comment: MEDIPS - error using MEDIPS.CpGenrich by sg • 0

I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …

Comment: Overcoming confounding in batch effect correction by mimi • 0

https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion

Comment: GSVA on RNAseq data by Robert Castelo ★ 3.4k

Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…

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Overcoming confounding in batch effect correction

Answer: Standardization of rlog transformed counts before PCA

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