Bioconductor Systempiper

Showing : systempiper • reset

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systempiper

5.5 years ago Deleted ▴ 70

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systemPipeRdata systempipeR

2.2 years ago appropiate • 0

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.3 years ago by Martin Morgan 25k • written 3.3 years ago by tina • 0

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systempiper run_edgeR

updated 7.6 years ago by Thomas Girke ★ 1.7k • written 7.6 years ago by alexandr.gopanenko ▴ 50

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R edger systemPipeR

7.2 years ago xuertowong • 0

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systempiper R batchjobs

updated 6.7 years ago by Thomas Girke ★ 1.7k • written 6.7 years ago by tarun2 • 0

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systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

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systempiper

5.8 years ago kimberly.dickson • 0

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systemPipeR rnaseq

5.7 years ago rj.innet • 0

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runCommandline systemPipeR bash

5.7 years ago rj.innet • 0

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by setarosd • 0

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predORF systemPipeR ORF prediction

5.1 years ago Mr.RB ▴ 20

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deseq2 systemPipeR

9.6 years ago Ugo Borello ▴ 340

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777

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systemPipeR

updated 2.4 years ago by dcassol ▴ 100 • written 2.4 years ago by Bioinformatics ▴ 30

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systemPipeRdata systemPipeR

2.2 years ago appropiate • 0

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deseq2 systempiper Tutorial

7.9 years ago musa ▴ 10

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systempiper go term

8.0 years ago A Gossner ▴ 50

18 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Votes

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

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