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systempiper
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3
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How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.2 years ago
appropiate
• 0
0
votes
0
replies
508
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.2 years ago
appropiate
• 0
0
votes
1
reply
772
views
how to analysis chip-seq data
systemPipeR
updated 2.4 years ago by
dcassol
▴ 100 • written 2.4 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.0k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
tina
• 0
0
votes
0
replies
688
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.1 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.7k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.5 years ago
Deleted
▴ 70
0
votes
2
replies
1.2k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.6 years ago
rj.innet
• 0
0
votes
2
replies
1.2k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.7 years ago
rj.innet
• 0
0
votes
2
replies
683
views
systemARGS not found
systempiper
5.8 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.7k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
clarisbaby
• 0
0
votes
1
reply
1.1k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.6 years ago by
Thomas Girke
★ 1.7k • written 6.6 years ago by
tarun2
• 0
0
votes
2
replies
1.2k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.2 years ago
xuertowong
• 0
2
votes
3
replies
2.1k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
abass.conteh
• 0
1
vote
2
replies
2.0k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.6 years ago by
Thomas Girke
★ 1.7k • written 7.6 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
3.7k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.9 years ago
musa
▴ 10
0
votes
4
replies
1.4k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.0 years ago
A Gossner
▴ 50
0
votes
2
replies
1.7k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.3 years ago by
Thomas Girke
★ 1.7k • written 8.3 years ago by
setarosd
• 0
0
votes
4
replies
1.6k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.6 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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