Showing : systemsbiology • reset
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
16 months ago info ▴ 10
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
2.2 years ago info ▴ 10
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
2.9 years ago Wuschel ▴ 10
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Job: Postdoctoral Researcher in the Computational Systems Pharmacology Research Group at University of Turku, Finland
systemsbiology network analysis drugvsdisease Job
9.3 years ago jing.tang • 0
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Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
9.4 years ago david.lynn • 0
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Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
10.2 years ago • updated 10.1 years ago heinrich.kovar ▴ 10
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Job: Postdoctoral Research Fellow in Bioinformatics - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
bioinformatician job rnaseq statistics systemsbiology Job
10.4 years ago Federico Marini ▴ 180
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Job: Post-Doctoral Research Fellow - Patient Genomics Data Visualization
visualization genomics personalized medicine systemsbiology js Job
10.5 years ago Hamid Bolouri ▴ 50
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Job: Research Associate (Postdoctoral) position at the MRC Cancer Unit, University of Cambridge, UK.
job computational biology genomics cancer systemsbiology Job
10.9 years ago Shamith.Samarajiwa ▴ 180
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Job: Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology bioinformatics position Job
11.0 years ago Thomas Girke ★ 1.7k
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RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
11.7 years ago Paul Shannon ▴ 750
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Adding Illumina GEO GPL IDs to IlluminaIDMapping?
SystemsBiology lumi SystemsBiology lumi
updated 14.6 years ago by 21k • written 14.6 years ago by ★ 1.2k
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SPIA, hacked to run with only selected pathways
SystemsBiology Pathways Cancer SPIA SystemsBiology Pathways Cancer SPIA
15.8 years ago Tarca, Adi ▴ 570
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Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
17.9 years ago McGee, Monnie ▴ 300
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1.4k
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slow graph methods
SystemsBiology graph SystemsBiology graph
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by 25k
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biomaRt -> XML::addNode masks graph
SystemsBiology Cancer graph biomaRt SystemsBiology Cancer graph biomaRt
18.0 years ago Seth Falcon ★ 7.4k
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limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 18.4 years ago by ★ 1.1k • written 18.4 years ago by 53k
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RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
19.4 years ago Seth Falcon ★ 7.4k
18 results • Page 1 of 1
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Answer: DESeq2 interactions by prominentmirabel • 0
Good experimental setup! For HP vs CNP, try results(dds_int, contrast=list("pollutionpolluted", "temphot", "pollutionpolluted.temphot")). T…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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