Bioconductor Tcgabiolinks

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139

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MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData

7 weeks ago • updated 5 weeks ago Giovanni Calice ▴ 160

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3.0k

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software error maftools tcgabiolinks

updated 5 weeks ago by snijesh ▴ 20 • written 6.5 years ago by Ramiro Magno ▴ 100

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214

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TCGAbiolinks TCGA clinical TCGA-BRCA

written 6 weeks ago by BioinfoMug • 0

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158

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

8 weeks ago BioinfoMug • 0

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979

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TCGAWorkflowData TCGAbiolinks

updated 9 weeks ago by Marcel Ramos 690 • written 24 months ago by Emre • 0

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156

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TCGAbiolinks

9 weeks ago jain72744 • 0

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279

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TCGAbiolinks Survival

updated 10 weeks ago by Lluís Revilla Sancho ▴ 730 • written 10 weeks ago by tirordep • 0

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145

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TCGAbiolinks ChAMP

12 weeks ago Thalita • 0

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385

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TCGAbiolinks error GDC_prepare

6 months ago leon • 0

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614

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TCGAbiolinks BatchQC BatchEffect

updated 8 months ago by wrab425 • 0 • written 13 months ago by snijesh ▴ 20

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245

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clinical TCGAbiolinks

9 months ago BioInfoBeginnerrr • 0

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1.2k

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TCGAbiolinks

11 months ago • updated 10 months ago Habil Zare ▴ 200

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849

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TCGAbiolinks limma

13 months ago • updated 12 months ago qiz218591 • 0

13 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0