Showing : Survival • reset
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I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 24 months ago by ▴ 760 • written 24 months ago by • 0
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KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
2.9 years ago Manav • 0
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899
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plots in gwasurvivr
gwasurvivr r survival cox
5.4 years ago laura.martinez.campelo • 0
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6
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8.7k
views
Issues installing DESeq2, installation path not writable, package: survival
deseq2 survival
updated 3.2 years ago by • 0 • written 5.6 years ago by • 0
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How to compute 95%CI after having C-index value?
survival nomogram cph 95CI
6.0 years ago huynguyen96.dnu ▴ 30
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0
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906
views
Estimating survival function with left truncation?
Icens Survival Left-truncation Interval-Censored
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
4
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7
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5.6k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
8.2 years ago array chip ▴ 420
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1.5k
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Need help determine optimal argument value on a rbsurv model
rbsurv microarray survival
8.3 years ago JackieMe • 0
2
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1
reply
2.6k
views
error/warning message while doing kmTCGA survival plot
RTCGA survival kmTCGA
updated 8.8 years ago by ▴ 10 • written 8.9 years ago by ▴ 30
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0
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1.2k
views
Error with Reportingtools using ENSEMBL gene ID
reporting tools modifyDF survival
9.6 years ago cagenet34 ▴ 20
0
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1
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2.0k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 10.7 years ago by • 0 • written 19.1 years ago by ▴ 170
0
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1
reply
3.4k
views
CanceR: Survival plots
cancer gui survival Kaplan-Meier
10.9 years ago • updated 10.8 years ago kmezhoud ▴ 10
0
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1
reply
2.1k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
12.2 years ago David Winsemius ▴ 40
0
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2
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5.8k
views
Problem installing \'survival\' package/ Fix request + other options?
Survival Survival
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
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1
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2.1k
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Fwd: feature weights in 'superpc' package
Survival ASSIGN Survival ASSIGN
updated 12.8 years ago by ★ 4.2k • written 12.8 years ago by ▴ 10
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10
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3.3k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
12.9 years ago Julie Zhu ★ 4.3k
0
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0
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5.1k
views
ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
13.3 years ago SSc Array Core ▴ 10
0
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1
reply
3.8k
views
undefined columns selected error when using bagging{ipred}
Survival Survival
updated 13.4 years ago by ★ 6.8k • written 13.4 years ago by ★ 13k
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2
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2.3k
views
Kaplan Meier curve
Survival Survival
updated 13.6 years ago by ★ 2.0k • written 13.6 years ago by ▴ 200
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0
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2.5k
views
survival prediction from multiple genes
Survival Ovarian Survival Ovarian
13.9 years ago Ahmet ZEHIR ▴ 50
0
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0
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1.3k
views
MLInterfaces, CMA, or Caret for censored survival?
Survival Survival
14.1 years ago Levi Waldron ▴ 10
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0
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1.3k
views
globaltest 5.6.1 bug fix
Survival globaltest Survival globaltest
14.6 years ago Goeman, J.J. MSTAT ▴ 150
0
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1
reply
1.6k
views
cox PH model - KM curve
Survival phenoTest Survival phenoTest
updated 14.6 years ago by ★ 2.0k • written 14.6 years ago by ▴ 330
0
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3
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2.4k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 14.8 years ago by ▴ 310 • written 14.8 years ago by ★ 8.2k
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0
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1.2k
views
booklet on using R for biomedical statistics
Survival Survival
15.1 years ago Coghlan, Avril ▴ 190
0
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0
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1.3k
views
globaltest 5.0.2
Survival globaltest Survival globaltest
16.1 years ago Goeman, J.J. MSTAT ▴ 150
0
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0
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1.2k
views
2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering Survival Clustering Survival
17.1 years ago sue@xlsolutions-corp.com ▴ 570
0
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1
reply
2.8k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 17.2 years ago by ★ 2.3k • written 17.2 years ago by ▴ 130
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2
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1.5k
views
applying coxfilter after LIMMA
Survival Cancer limma Survival Cancer limma
updated 17.2 years ago by 68k • written 17.3 years ago by ▴ 330
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3
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2.6k
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gene expression data followup
Survival Cancer Survival Cancer
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 330
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3
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2.1k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.3 years ago Patrick Aboyoun ★ 1.6k
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0
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1.4k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
17.6 years ago Nick Henriquez ▴ 20
0
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2
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1.6k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 30
0
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2
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1.8k
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'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
17.7 years ago Glazko, Galina ▴ 350
0
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0
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2.3k
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Significance Analysis of Microarrays (SAM)
Survival Survival
17.8 years ago Eleni Christodoulou ▴ 150
0
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0
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1.5k
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
18.1 years ago Ana Conesa ▴ 340
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0
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1.5k
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Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
18.1 years ago Holger Schwender ▴ 900
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0
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1.5k
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Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
18.1 years ago Julian Lee ▴ 140
0
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0
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1.4k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
18.2 years ago Boel Brynedal ▴ 200
0
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0
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1.6k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
18.3 years ago Ana Conesa ▴ 340
0
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1
reply
1.4k
views
combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
18.4 years ago Richard Harrison ▴ 70
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4
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2.0k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 18.4 years ago by ▴ 230 • written 18.4 years ago by ▴ 110
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2
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1.6k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 18.4 years ago by ▴ 40 • written 18.4 years ago by ▴ 110
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2
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1.6k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 18.4 years ago by ★ 13k • written 18.4 years ago by ▴ 70
0
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0
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1.4k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
18.4 years ago Richard Friedman ★ 2.0k
0
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2
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1.7k
views
problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 18.4 years ago by ▴ 500 • written 18.4 years ago by ▴ 510
0
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0
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1.3k
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
18.4 years ago Wolfgang Raffelsberger ▴ 160
0
votes
7
replies
2.5k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 2.2k
0
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4
replies
1.8k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 20
0
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1
reply
1.4k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 18.5 years ago by ▴ 120 • written 18.5 years ago by ▴ 10
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We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
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No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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