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Input of tscR
microarray normalization tscR time-course
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by • 0
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2
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1.2k
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Time-series analysis with control and treated samples, and Fold Change extraction in DESeq2
deseq2 time-serie time-course fold-change
updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by • 0
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894
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DESeq2 analysis of multifactorial RNAseq experiment
deseq2 design time-course
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
2
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3
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2.1k
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Three-factor design with DESeq2
deseq2 Time-course
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
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7
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3.1k
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Visualization for Time Course "LRT" test in DESeq2
deseq2 time-course
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 50
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How to specify covariates in maSigPro analysis (like limma)
masigpro covariates limma differential expression time-course
8.1 years ago veersingh.marwah • 0
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8
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3.3k
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Limma for differential expression in a time-course
limma multiple time points time-course differential expression
updated 8.2 years ago by ★ 29k • written 8.2 years ago by • 0
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3
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[DESeq2] time-course Experimental design
rnaseq deseq2 time-course
updated 8.3 years ago by ▴ 690 • written 8.3 years ago by ▴ 10
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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