Bioconductor Time-course

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885

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microarray normalization tscR time-course

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by keremwai • 0

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1.2k

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deseq2 time-serie time-course fold-change

updated 5.6 years ago by swbarnes2 ★ 1.4k • written 5.6 years ago by Victor Chano • 0

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909

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deseq2 design time-course

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by Victor Chano • 0

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2.2k

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deseq2 Time-course

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by h.valipour.k • 0

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3.1k

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deseq2 time-course

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by rbenel ▴ 50

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1.3k

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masigpro covariates limma differential expression time-course

8.2 years ago veersingh.marwah • 0

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3.3k

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limma multiple time points time-course differential expression

updated 8.2 years ago by Aaron Lun ★ 29k • written 8.2 years ago by Jake • 0

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2.7k

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rnaseq deseq2 time-course

updated 8.4 years ago by Gavin Kelly ▴ 690 • written 8.4 years ago by inzirio ▴ 10

8 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k