Bioconductor Timecoursedata

Showing : timecoursedata • reset

votes

replies

799

views

DESeq2 timecoursedata GeneExpression

updated 7 months ago by ATpoint ★ 4.6k • written 7 months ago by pangtaihin • 0

votes

replies

521

views

DESeq2 ImpulseDE2 timecour timecoursedata moanin

7 months ago Aurora • 0

votes

replies

1.8k

views

timecoursedata limma

15 months ago • updated 12 months ago triZZla • 0

vote

replies

2.1k

views

time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 16 months ago by ATpoint ★ 4.6k • written 16 months ago by Debebe • 0

votes

901

views

RNASeqData TimeCourse DESeq2 timecoursedata

updated 5 months ago by Michael Love 43k • written 17 months ago by georgii.vdovin • 0

votes

replies

606

views

timecoursedata edgeR

updated 21 months ago by Gordon Smyth 52k • written 21 months ago by boczniak767 ▴ 740

votes

replies

845

views

DESeq2 timecoursedata replicates

updated 22 months ago by Michael Love 43k • written 22 months ago by fepesanz8 • 0

votes

807

views

DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by arshad1292 • 0

votes

replies

1.2k

views

QTL fourier TimeSeriesExperiment timecoursedata

3.7 years ago Daphne • 0

votes

replies

1.8k

views

limma proteomics TMTlabeling timecoursedata

updated 4.1 years ago by SamGG ▴ 360 • written 4.1 years ago by maleknias • 0

10 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Awards • All