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timecoursedata
•
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3
votes
13
replies
1.3k
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Timely differentially expressed genes
timecoursedata
limma
7 months ago • updated 4 months ago
triZZla
• 0
1
vote
6
replies
875
views
Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Debebe
• 0
0
votes
1
reply
484
views
DESeq2, Timecourse using fitted splines
timecoursedata
RNASeqData
TimeCourse
DESeq2
updated 9 months ago by
Michael Love
41k • written 9 months ago by
georgii.vdovin
• 0
0
votes
0
replies
474
views
Plot profiles for each group - spline analysis in edgeR
timecoursedata
edgeR
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
boczniak767
▴ 720
0
votes
2
replies
627
views
DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 13 months ago by
Michael Love
41k • written 13 months ago by
fepesanz8
• 0
0
votes
1
reply
607
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 17 months ago by
Michael Love
41k • written 17 months ago by
arshad1292
• 0
0
votes
0
replies
950
views
Job:
Biostatistics Research Associate, York, UK
QTL
fourier
TimeSeriesExperiment
timecoursedata
3.0 years ago
Daphne
• 0
0
votes
3
replies
1.4k
views
Find DEPs among TMT labeling proteom time course data by limma
limma
proteomics
TMTlabeling
timecoursedata
updated 3.5 years ago by
SamGG
▴ 350 • written 3.5 years ago by
maleknias
• 0
8 results • Page
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Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from str(ortologos_filtrados) data.frame': 14 obs. …
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Please provide more information! In your first post you seem to report another error than in your 2nd post: `No gene can be mapped...` vers…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
I don't really have any additional suggestion here.
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none
by
Michael Love
41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Votes
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
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Michael Love
41k
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shepherl
3.8k
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Gordon Smyth
50k
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taur.vil
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Yuan Tian
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Wageningen University, Wageningen, the Netherlands,
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