Showing : tximportData • reset
3
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5
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2.7k
views
txImport: a gene seems missing from the sample data
txImportData txImport
updated 3.3 years ago by 65k • written 7.2 years ago by • 0
3
votes
3
replies
958
views
What is the correct way to import transcript abundances from 3' Quantseq results that calculated by kallisto?
tximport tximportData Quantseq kallisto
19 months ago • updated 18 months ago duhwa.lee • 0
2
votes
6
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1.6k
views
[DESeq2] Different results from tutorial
deseq2 tximportdata tximport
updated 6.0 years ago by 42k • written 6.0 years ago by • 0
2
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9
replies
1.2k
views
Importing RSEM processed data already formatted as a summarized experiment into DESeq2
tximport tximportData DESeq2
10 months ago Ndimensional ▴ 20
2
votes
3
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970
views
Import RSEM output without sample data
DESeq2 tximportData tximport
updated 2.2 years ago by 42k • written 2.3 years ago by • 0
2
votes
3
replies
1.3k
views
Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
17 months ago mohammedtoufiq91 ▴ 10
1
vote
2
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1.0k
views
What is the expected location of bootstrap samples relative to quant.sf file ?
tximport tximportdata salmon
5.6 years ago fcuy047 • 0
1
vote
2
replies
1.2k
views
trouble importing data for DEseq2 workflow
deseq2 tximport tximportdata pasilla Tutorial
updated 5.6 years ago by 42k • written 5.6 years ago by • 0
1
vote
8
replies
33k
views
How to create tx2gene.gencode.v27.csv
tximportdata
updated 5.9 years ago by 42k • written 5.9 years ago by • 0
0
votes
1
reply
927
views
How to use tx import on output of abundance file
tximportData tximport
updated 3.5 years ago by ★ 3.9k • written 3.5 years ago by • 0
0
votes
4
replies
1.1k
views
Alternative for wininet method in tximeta
DESeq2 tximport tximportData tximeta
22 months ago uhlkatie • 0
0
votes
7
replies
1.7k
views
Problem with Tximport
tximportData tximport
3.3 years ago agoesmartini • 0
0
votes
1
reply
852
views
Multi-factor Analysis in DeSEQ2
tximport R tximportData RNASeq DESeq2
updated 3.0 years ago by 42k • written 3.0 years ago by • 0
0
votes
3
replies
928
views
tximport fails when RSEM output options produce files with additional columns?
DESeq2 tximportData tximpor
updated 2.8 years ago by 42k • written 2.9 years ago by • 0
0
votes
2
replies
682
views
tximport error in reading salmon output files?
tximport tximportData
updated 3 months ago by • 0 • written 11 months ago by • 0
0
votes
7
replies
1.7k
views
PCA results different from th same sample but different counting method
deseq2 pca tximportdata htseqcounts
updated 7.9 years ago by 42k • written 7.9 years ago by ▴ 40
0
votes
1
reply
1.7k
views
How to remove genes with 0 counts in tximport?
tximport deseq tximportdata deseq2
updated 7.3 years ago by 42k • written 7.3 years ago by ▴ 10
0
votes
3
replies
13k
views
Problem installing tximportData
tximportdata
7.2 years ago elg • 0
0
votes
9
replies
3.5k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 6.3 years ago by ▴ 80 • written 7.9 years ago by ▴ 40
0
votes
1
reply
2.4k
views
could not find function "tximport"
tximportdata
updated 6.2 years ago by 50k • written 6.2 years ago by ▴ 30
0
votes
4
replies
1.1k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 4.1 years ago by 42k • written 4.1 years ago by • 0
21 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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