Bioconductor Tximportdata

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2.7k

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txImportData txImport

updated 3.3 years ago by James W. MacDonald 65k • written 7.2 years ago by alexlok • 0

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925

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tximport tximportData Quantseq kallisto

18 months ago duhwa.lee • 0

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1.6k

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deseq2 tximportdata tximport

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by changhan1110 • 0

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1.2k

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tximport tximportData DESeq2

10 months ago • updated 9 months ago Ndimensional ▴ 20

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956

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DESeq2 tximportData tximport

updated 2.2 years ago by Michael Love 41k • written 2.2 years ago by Luisa • 0

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1.2k

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DESeq2 tximport rsem RNASeq tximportData

17 months ago mohammedtoufiq91 ▴ 10

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tximport tximportdata salmon

5.5 years ago fcuy047 • 0

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1.2k

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deseq2 tximport tximportdata pasilla Tutorial

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by Stanley Yang • 0

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33k

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tximportdata

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by mmokrejs • 0

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921

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tximportData tximport

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by Julie • 0

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1.1k

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DESeq2 tximport tximportData tximeta

22 months ago uhlkatie • 0

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1.7k

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tximportData tximport

3.3 years ago agoesmartini • 0

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844

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tximport R tximportData RNASeq DESeq2

updated 2.9 years ago by Michael Love 41k • written 2.9 years ago by pthom010 • 0

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918

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DESeq2 tximportData tximpor

updated 2.8 years ago by Michael Love 41k • written 2.8 years ago by Alexander • 0

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658

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tximport tximportData

updated 12 weeks ago by Matteo • 0 • written 10 months ago by barrypraveen • 0

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1.7k

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deseq2 pca tximportdata htseqcounts

updated 7.8 years ago by Michael Love 41k • written 7.8 years ago by jarod_v6@libero.it ▴ 40

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1.7k

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tximport deseq tximportdata deseq2

updated 7.2 years ago by Michael Love 41k • written 7.2 years ago by Peter Alto ▴ 10

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13k

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tximportdata

7.1 years ago elg • 0

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3.5k

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bioclIte tximportData

updated 6.3 years ago by hauken_heyken ▴ 80 • written 7.8 years ago by jarod_v6@libero.it ▴ 40

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2.4k

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tximportdata

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by s.corley ▴ 30

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1.1k

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Salmon tximport tximportdata ensembl

updated 4.0 years ago by Michael Love 41k • written 4.0 years ago by slouis • 0

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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