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Showing :
variancepartition
•
reset
1
vote
2
replies
247
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
5 weeks ago • updated 4 weeks ago
Le
• 0
1
vote
4
replies
701
views
BiocParallel serialization errors on Windows
variancePartition
BiocParallel
5 months ago
hayleyw
• 0
1
vote
7
replies
892
views
DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition
RNASeqData
limma
BulkRNAseq
RNASeq
updated 5 months ago by
Gordon Smyth
50k • written 7 months ago by
Gimena
• 0
0
votes
9
replies
879
views
How long does it usually take to complete dream() from start to finish?
variancePartition
mixedmodel
dream
9 months ago
hayleyw
• 0
1
vote
5
replies
1.6k
views
How many parameters should be included in the model design for deseq2?
DESeq2
variancePartition
14 months ago • updated 13 months ago
Weiqian
▴ 10
1
vote
4
replies
724
views
Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq
variancePartition
edgeR
dream
14 months ago
DH
• 0
0
votes
5
replies
993
views
Semi-technical replicates and voom sample weights
variancePa
variancePartition
limma-voom
dream
updated 14 months ago by
Gordon Smyth
50k • written 14 months ago by
Le
• 0
0
votes
0
replies
462
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
21 months ago
Jonathan
• 0
1
vote
1
reply
1.3k
views
Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR
limma
variancePartition
updated 2.8 years ago by
Gordon Smyth
50k • written 2.8 years ago by
jackgisby
• 0
1
vote
3
replies
1.3k
views
limma - contrast matrix hypothesis testing
limma
variancePartition
updated 2.9 years ago by
Gordon Smyth
50k • written 2.9 years ago by
jarod
▴ 30
1
vote
0
replies
818
views
What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition
limma
3.1 years ago
Junghoon
▴ 10
0
votes
1
reply
1.2k
views
Error while running variancePartition::dream()
variancePartition
limma
BiocParallel
3.1 years ago
Junghoon
▴ 10
0
votes
1
reply
1.1k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel
limma
variancePartition
3.1 years ago • updated 2.9 years ago
Junghoon
▴ 10
8
votes
11
replies
2.4k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream
variancePartition
limma
differential expression
repeated measures
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
hermidalc
▴ 20
3
votes
8
replies
1.5k
views
Results from variancePartition not matching those from lme4
variancepartition
lme4
mixedmodel
updated 4.6 years ago by
gabriel.hoffman
▴ 110 • written 4.7 years ago by
c.taylor
• 0
4
votes
3
replies
1.7k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma
voom
variancePartition
dream
updated 4.6 years ago by
gabriel.hoffman
▴ 110 • written 4.9 years ago by
Ben
▴ 50
16 results • Page
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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
SAF files must not have a header.
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
xuz
• 0
Could you try the latest version (1.40.1) to see how it works, I am not able to replicate the error message on my computer here.
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
merv
▴ 120
Thanks! I can confirm it is working now - had been broken since sometime yesterday.
Comment: Errors in chromosome annotation-biomaRt
by
landenshanie
▴ 40
Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
Comment: unable to access bioconductor packages - qvalue installation failed...
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