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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
11 months ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.0k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 22 months ago by
ashleymaeconard
▴ 10 • written 3.3 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
593
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 3.3 years ago by
shepherl
3.4k • written 3.3 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
702
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 5.4 years ago by
Jiang, Mike
★ 1.3k • written 5.4 years ago by
Robert Baer
▴ 70
7
votes
2
replies
922
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 5.6 years ago by
Andrzej Oleś
▴ 750 • written 5.6 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
1.9k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 5.8 years ago by
Gregor Rot
▴ 10 • written 5.8 years ago by
mwinerip
• 0
3
votes
3
replies
1.5k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
6.1 years ago
gabor.halasz
• 0
2
votes
3
replies
1.8k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 7.0 years ago by
aaron
▴ 10 • written 7.0 years ago by
timothypyork
• 0
1
vote
2
replies
1.3k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 7.1 years ago by
Dan Tenenbaum
★ 8.2k • written 7.1 years ago by
anthonycolombo60
• 0
3
votes
2
replies
981
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 7.5 years ago by
Dan Tenenbaum
★ 8.2k • written 7.5 years ago by
KB
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Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
• 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
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