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volcanoplot
•
reset
0
votes
4
replies
1.2k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
Michael
• 0
0
votes
1
reply
765
views
part of the volcano plot does not appear.
plot
volcano
volcanoplot
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
Sooni
▴ 10
0
votes
1
reply
574
views
Assigning the name of top 100 DE transcripts/genes to Volcano plot
limma
DEGreport
Volcanoplot
updated 16 months ago by
Gordon Smyth
50k • written 16 months ago by
Mohammad
• 0
10
votes
3
replies
9.0k
views
Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot
limma
fdr
6.8 years ago • updated 3.4 years ago
tcalvo
▴ 90
3
votes
5
replies
2.0k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
camillab.
▴ 10
1
vote
5
replies
2.3k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 5.1 years ago by
Gordon Smyth
50k • written 5.1 years ago by
xingxd16
▴ 20
0
votes
4
replies
6.9k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
dmm204
• 0
2
votes
4
replies
7.2k
views
Volcano Plot (highlighting top genes in a different color)
volcanoplot
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
Nithisha
▴ 10
0
votes
1
reply
1.0k
views
Pseudo-coloring DiffBind volcano plot
diffbind
chipseq
volcanoplot
ggplot2
updated 6.5 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
rbronste
▴ 60
0
votes
2
replies
1.7k
views
Draw volcano plot by modifying contrast matrix (lumi package)
volcanoplot
design and contrast matrix
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
marongiu.luigi
• 0
5
votes
4
replies
6.7k
views
Volcano plot labeling troubles
limma
volcanoplot
updated 6.8 years ago by
Gordon Smyth
50k • written 9.5 years ago by
mccallionc403
• 0
0
votes
2
replies
1.2k
views
volcano plot in Limma
limma
volcanoplot
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
mheydarpour
▴ 10
7
votes
4
replies
5.7k
views
Gene symbols on MA-plot
limma
plot.MA
volcanoplot
oligo
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
2
votes
2
replies
3.1k
views
cummeRbund change point size in volcano plot
cummerbund
ggplot2
size
r
volcanoplot
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
ianmisner17
▴ 20
14 results • Page
1 of 1
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Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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