Bioconductor WateRmelon

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1.0k

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DNAMethylation wateRmelon Computation minfi

3.4 years ago calen.p.ryan • 0

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1.7k

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wateRmelon Illumina EPIC pfilter

updated 6.1 years ago by lschal • 0 • written 6.1 years ago by anne-kristin.stavrum • 0

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2.2k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 6.3 years ago by tgorri ▴ 10 • written 6.3 years ago by sara.blocquiaux • 0

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1.7k

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methylation ENmix BMIQ wateRmelon

6.9 years ago • updated 6.8 years ago moldach ▴ 20

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2.1k

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minfi methylumi watermelon

8.9 years ago Tom ▴ 10

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3.0k

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wateRmelon methylation EPIC normalization

9.0 years ago • updated 8.9 years ago Wade Davis ▴ 60

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2.1k

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limma watermelon methylumi bmiq

updated 9.0 years ago by tgorri ▴ 10 • written 9.0 years ago by poojitha.stemcell ▴ 10

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2.4k

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minfi watermelon cancer 450k normalization

updated 10.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 10.4 years ago by metamaden ▴ 10

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2.7k

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watermelon betaqn pfilter getProbeInfo minfi

10.9 years ago gctromp ▴ 10

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3.1k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 12.1 years ago by Tim Triche ★ 4.2k • written 12.2 years ago by Martin Rijlaarsdam ▴ 190

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Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0

You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by victor04052024 • 0

The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…

Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k

We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.

Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0

I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…

Comment: segfault in edgeR glmQLFit by Mark • 0

Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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