Bioconductor WateRmelon

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947

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DNAMethylation wateRmelon Computation minfi

3.2 years ago calen.p.ryan • 0

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1.6k

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wateRmelon Illumina EPIC pfilter

updated 5.9 years ago by lschal • 0 • written 5.9 years ago by anne-kristin.stavrum • 0

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2.1k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 6.1 years ago by tgorri ▴ 10 • written 6.1 years ago by sara.blocquiaux • 0

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1.6k

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methylation ENmix BMIQ wateRmelon

6.7 years ago moldach ▴ 20

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1.9k

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minfi methylumi watermelon

8.7 years ago Tom ▴ 10

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2.9k

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wateRmelon methylation EPIC normalization

8.8 years ago Wade Davis ▴ 60

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1.9k

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limma watermelon methylumi bmiq

updated 8.9 years ago by tgorri ▴ 10 • written 8.9 years ago by poojitha.stemcell ▴ 10

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2.3k

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minfi watermelon cancer 450k normalization

updated 10.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 10.3 years ago by metamaden ▴ 10

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2.6k

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watermelon betaqn pfilter getProbeInfo minfi

10.7 years ago gctromp ▴ 10

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2.9k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 12.0 years ago by Tim Triche ★ 4.2k • written 12.0 years ago by Martin Rijlaarsdam ▴ 190

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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