Bioconductor Watermelon

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310

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DNAMethylation wateRmelon Computation minfi

13 months ago calen.p.ryan • 0

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781

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wateRmelon Illumina EPIC pfilter

updated 3.9 years ago by lschal • 0 • written 3.9 years ago by anne-kristin.stavrum • 0

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1.1k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 4.1 years ago by tgorri ▴ 10 • written 4.1 years ago by sara.blocquiaux • 0

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900

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methylation ENmix BMIQ wateRmelon

4.6 years ago moldach ▴ 20

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1.3k

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minfi methylumi watermelon

6.7 years ago Tom ▴ 10

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2.0k

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wateRmelon methylation EPIC normalization

6.7 years ago Wade Davis ▴ 60

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1.2k

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limma watermelon methylumi bmiq

updated 6.8 years ago by tgorri ▴ 10 • written 6.8 years ago by poojitha.stemcell ▴ 10

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1.7k

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minfi watermelon cancer 450k normalization

updated 8.2 years ago by Kasper Daniel Hansen 6.5k • written 8.2 years ago by metamaden ▴ 10

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1.8k

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watermelon betaqn pfilter getProbeInfo minfi

8.6 years ago gctromp ▴ 10

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1.9k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 9.9 years ago by Tim Triche ★ 4.2k • written 9.9 years ago by Martin Rijlaarsdam ▴ 190

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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