Showing : watermelon • reset
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A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
2.1 years ago calen.p.ryan • 0
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7
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1.2k
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Getting wrong rownames of MSet object when using pfilter from watermelon
wateRmelon Illumina EPIC pfilter
updated 4.8 years ago by • 0 • written 4.8 years ago by • 0
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3
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1.7k
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Combining pfilter (wateRmelon) and preprocessNoob (minfi)
wateRmelon minfi methylation pfilter preprocessNoob
updated 5.1 years ago by ▴ 10 • written 5.1 years ago by • 0
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0
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1.3k
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
5.6 years ago moldach ▴ 20
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1
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1.6k
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MethylSet to MethyLumiSet
minfi methylumi watermelon
7.6 years ago Tom ▴ 10
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5
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2.4k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon methylation EPIC normalization
7.7 years ago Wade Davis ▴ 60
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2
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1.5k
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Error while using BMIQ normalisation on a methylumiSet
limma watermelon methylumi bmiq
updated 7.8 years ago by ▴ 10 • written 7.8 years ago by ▴ 10
1
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2
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2.0k
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QC/normalization standards for cancer studies with 450k array data
minfi watermelon cancer 450k normalization
updated 9.2 years ago by ★ 6.5k • written 9.2 years ago by ▴ 10
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3
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2.2k
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minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon betaqn pfilter getProbeInfo minfi
9.6 years ago gctromp ▴ 10
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10
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2.4k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 10.9 years ago by ★ 4.2k • written 10.9 years ago by ▴ 190
10 results • Page 1 of 1
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Answer: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k
I would use the mapper I note above, and build your own `OrgDb`, then do the GO analysis directly. ``` > library(AnnotationForge) > option…
Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k
There's already an `OrgDb` for this species on the AnnotationHub that hypothetically would be ideal, but there are almost no GO mappings, s…
Answer: Trying to convert ATACseq annotations of non-model species into human orthologs, by James W. MacDonald 67k
It's probably not going to work that well using that species, but you can give it a shot. Note that you don't appear to have any good IDs. …
Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by Guido Hooiveld ★ 4.1k
Not an answer to your question, but it seems the content of the column `Entrez ID` are actually no *entrez ids* but rather *aliases*... Ent…
Answer: ChIPpeakAnno can not load data by hukai916 ▴ 10
`ChIPpeakAnno` stores several example files under its `extdata` directory for demonstration purposes. These files can be found with the `sy…
Votes
Answer: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
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