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questions
0
votes
2
replies
1.2k
views
Retrieve gene summary start/end in biomart query
biomaRt
20 months ago
rbenel
▴ 40
0
votes
18
replies
3.5k
views
Indexing FASTA file using RSamtools
Rsamtools
GenomicFeatures
2.2 years ago
rbenel
▴ 40
0
votes
7
replies
1.2k
views
Uniform window size for different genes
ggbio
2.3 years ago
rbenel
▴ 40
0
votes
0
replies
599
views
Y axis Data Track GVIZ
GVIZ
2.5 years ago • updated 2.4 years ago
rbenel
▴ 40
0
votes
4
replies
1.1k
views
window parameter in DataTrack function with a single sample
Gviz
2.7 years ago • updated 2.5 years ago
rbenel
▴ 40
0
votes
0
replies
358
views
Enlarge arrows representing introns in Gene Region Track Gviz
Gvi
2.7 years ago
rbenel
▴ 40
2
votes
7
replies
1.2k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
2.7 years ago
rbenel
▴ 40
0
votes
3
replies
1.0k
views
Error using old ensembldb annotations with R 4.0 +
anno
EnsDb.Hsapiens.v79
ensDb.HSapiens.v92
AnnotationDbi
ensembldb
2.7 years ago
rbenel
▴ 40
2
votes
11
replies
1.2k
views
phenotypic table for DESeqDataSetFromHTSeqCount
DESeq2
3.0 years ago
rbenel
▴ 40
1
vote
3
replies
903
views
Collapse Technical Replicates and Group-specific condition effects, individuals nested within groups
deseq2
RNAseq
model.matrix
collapseTechnicalReplicates
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
rbenel
▴ 40
1
vote
3
replies
1.2k
views
Visualization for DE transcripts
rnaseqdtu
4.8 years ago
rbenel
▴ 40
0
votes
2
replies
939
views
Importing Salmon counts with tximport with host and virus genomes
salmon
tximport
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
rbenel
▴ 40
2
votes
8
replies
1.2k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
5.3 years ago
rbenel
▴ 40
3
votes
9
replies
2.2k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
rbenel
▴ 40
1
vote
1
reply
1.1k
views
tximport of 3 tagged RNA-seq counts from Salmon for downstream analysis with DESeq2
tximport
deseq2
rnaseq
3' tagged RNA
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
rbenel
▴ 40
1
vote
5
replies
1.5k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.5 years ago by
Michael Love
41k • written 5.6 years ago by
rbenel
▴ 40
0
votes
2
replies
832
views
Graphically Represent p-values from plot_annot_score in package GOfuncR
GOfuncR
plot_anno_scores
plot_stats
updated 5.6 years ago by
steffi_grote
• 0 • written 5.6 years ago by
rbenel
▴ 40
3
votes
9
replies
2.5k
views
DESeq2 Normalized Counts for Mfuzz
deseq2
rnaseq
mfuzz
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
rbenel
▴ 40
0
votes
4
replies
1.1k
views
Error in Apeglm Method for Effect Size Shrinkage
deseq2
apeglm
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
rbenel
▴ 40
1
vote
7
replies
2.0k
views
Visualization for Time Course "LRT" test in DESeq2
deseq2
time-course
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
rbenel
▴ 40
0
votes
3
replies
1.4k
views
Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms
diffrential expression
noncoding rna
TSIS
isoformswitchanalyzeR
6.0 years ago
rbenel
▴ 40
0
votes
2
replies
856
views
Chromosme Name: "CHR_HSCHR19..."
biomart
ensembl
grch38
6.1 years ago
rbenel
▴ 40
1
vote
5
replies
1.9k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
rbenel
▴ 40
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