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Transcript level expression for CCLE
recount3 recount CCLE
updated 3 months ago by ★ 1.0k • written 3 months ago by ▴ 510
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1
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504
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GenomicDataCommons: Retrieve patient data for RPPA samples
TCGA GenomicDataCommons GDC
written 10 months ago by ▴ 510
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744
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Comment: Comment: DESeq: low p-values for genes with zero counts in all but one sample of the comp
11 months ago António Miguel de Jesus Domingues ▴ 510
0
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2
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744
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DESeq: low p-values for genes with zero counts in all but one sample of the compared groups
DESeq2 DifferentialExpression
11 months ago António Miguel de Jesus Domingues ▴ 510
0
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0
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773
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Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
20 months ago António Miguel de Jesus Domingues ▴ 510
1
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1
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2.0k
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Comment: Comment: Cannot download GEOmetadb sqlite file
21 months ago António Miguel de Jesus Domingues ▴ 510
2
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2
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1.1k
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[recount3] Merge gene counts tables from multiple projects (SRP)
recount3 recountWorkflow
updated 2.5 years ago by ★ 1.0k • written 2.6 years ago by ▴ 510
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0
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1.1k
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Comment: Comment: Merge gene counts tables from multiple projects (SRP)
2.6 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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2.0k
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Comment: Comment: False discovery rates in DEP
2.9 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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874
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Job: Scientist/Sr. Scientist – Data Science (m/f/d)
DataIntegration JobPosting
3.0 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
replies
802
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annotatr with custom TxDb
GenomicFeatures annotatr genomicFe
3.0 years ago António Miguel de Jesus Domingues ▴ 510
2
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1
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1.4k
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Retrieve gene description with ensembldb
biomaRt ensembldb AnnotationData
updated 3.1 years ago by ★ 2.0k • written 3.1 years ago by ▴ 510
0
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0
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895
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.3 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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745
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Answer: Answer: Find significant genes related to a specific disease
3.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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1
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1.7k
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Comment: Comment: Do I have clustering by library size?
3.5 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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855
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Answer: A: Using DEP package with continuous variable for condition, rather than categorica
3.6 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
replies
879
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Job: Scientific Computing Team Leader
job bioinformatics image analysis research software Job
3.6 years ago António Miguel de Jesus Domingues ▴ 510
1
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0
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1.0k
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Job: Bioinformatics Data Analyst
R RNA-seq job Job
3.9 years ago António Miguel de Jesus Domingues ▴ 510
0
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1
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1.2k
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Comment: C: Detection of large regions of expression
4.6 years ago António Miguel de Jesus Domingues ▴ 510
0
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1
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1.2k
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Comment: C: Detection of large regions of expression
4.6 years ago António Miguel de Jesus Domingues ▴ 510
3
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5
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1.2k
views
Detection of large regions of expression
derfinder intergenic expression
updated 4.6 years ago by ★ 1.0k • written 4.6 years ago by ▴ 510
3
votes
3
replies
1.1k
views
Clarification of results tables in DEP
DEP proteomics
updated 4.8 years ago by ▴ 70 • written 4.8 years ago by ▴ 510
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3
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899
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collapseReplicates changes order of factors
deseq2 bug
5.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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899
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Comment: C: collapseReplicates changes order of factors
5.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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899
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Comment: C: collapseReplicates changes order of factors
5.4 years ago António Miguel de Jesus Domingues ▴ 510
1
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0
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1.9k
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Comment: C: Normalization for small non-coding RNA
5.4 years ago António Miguel de Jesus Domingues ▴ 510
2
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1
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1.9k
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Answer: A: Normalization for small non-coding RNA
5.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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1.2k
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Comment: C: Speed and memory of custom function using scanBam
5.5 years ago António Miguel de Jesus Domingues ▴ 510
1
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2
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1.2k
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Speed and memory of custom function using scanBam
rsamtools scanbamparam bam
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 510
0
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0
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1.2k
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ExpressionAtlas: download RPKM/TPM
ExpressionAtlas EMBL TPM
6.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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2.9k
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Comment: C: biomaRt: drerio_gene_ensembl dataset missing
6.4 years ago António Miguel de Jesus Domingues ▴ 510
8
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8
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2.9k
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biomaRt: drerio_gene_ensembl dataset missing
biomart ensembl ripseeker
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 510
1
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0
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2.9k
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Comment: C: biomaRt: drerio_gene_ensembl dataset missing
6.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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2.9k
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Comment: C: biomaRt: drerio_gene_ensembl dataset missing
6.4 years ago António Miguel de Jesus Domingues ▴ 510
0
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1
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1.7k
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Comment: C: derfinder: how to merge regions and counts from individual chromosomes
6.4 years ago António Miguel de Jesus Domingues ▴ 510
3
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3
replies
1.7k
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derfinder: how to merge regions and counts from individual chromosomes
derfinder recount
updated 6.4 years ago by ★ 1.0k • written 6.4 years ago by ▴ 510
2
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1
reply
1.4k
views
derfinder mean Expressed Region cutoff
derfinder
updated 6.4 years ago by ★ 1.0k • written 6.4 years ago by ▴ 510
0
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0
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1.8k
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Comment: C: DESeq2 design formula: single control for multiple conditions [RIP-seq]
6.6 years ago António Miguel de Jesus Domingues ▴ 510
0
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1
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1.8k
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Comment: C: DESeq2 design formula: single control for multiple conditions [RIP-seq]
6.6 years ago António Miguel de Jesus Domingues ▴ 510
3
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4
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1.8k
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DESeq2 design formula: single control for multiple conditions [RIP-seq]
deseq2 RIP
6.6 years ago António Miguel de Jesus Domingues ▴ 510
2
votes
2
replies
2.4k
views
Gviz: plotting multiple custom tracks or adding panel legend at the top
gviz
updated 7.4 years ago by ▴ 80 • written 7.5 years ago by ▴ 510
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1
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2.4k
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Comment: C: Gviz: plotting multiple custom tracks or adding panel legend at the top
7.5 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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1.5k
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Comment: C: biomaRt: Wormbase not working
7.7 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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1.5k
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Comment: C: biomaRt: Wormbase not working
7.7 years ago António Miguel de Jesus Domingues ▴ 510
0
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4
replies
1.5k
views
biomaRt: Wormbase not working
biomart wormbase
7.7 years ago António Miguel de Jesus Domingues ▴ 510
1
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1
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4.4k
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Comment: C: Plot ggplot2 and ggbio Images Together
8.9 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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4.4k
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Comment: C: Plot ggplot2 and ggbio Images Together
8.9 years ago António Miguel de Jesus Domingues ▴ 510
7
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2
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4.4k
views
Answer: A: Plot ggplot2 and ggbio Images Together
8.9 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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3.1k
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Comment: C: A good alternative for RDavidWebService ??
8.9 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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2.7k
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Comment: C: plotting interactions in gviz (Chia-Pet, HiC, 5C). New feature?
9.1 years ago António Miguel de Jesus Domingues ▴ 510
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