Bioconductor Forum

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 3 hours ago by Daniele • 0 • written 5.5 years ago by Guido Hooiveld ★ 4.0k

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1.9k

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sgseq rnaseq

updated 20 hours ago by Leonard Goldstein ▴ 220 • written 6.7 years ago by Sylvain Foisy ▴ 80

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208

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DESeq2 timecoursedata GeneExpression

updated 12 hours ago by ATpoint ★ 4.1k • written 1 day ago by pangtaihin • 0

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ChAMP

updated 13 hours ago by shepherl 3.9k • written 21 hours ago by Galia • 0

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254

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RCy3

5 days ago • updated 8 hours ago Matthew Thornton ▴ 360

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DECIPHER

9 hours ago • updated 6 hours ago makala • 0

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121

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DESeq2 eigencorplot PCAtools

3 days ago • updated 6 hours ago BioinfGuru ▴ 30

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ChIPseeker

16 hours ago Anton01 • 0

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ReactomeGSA BatchEffect RNASeqData

13 hours ago Shaimaa Gamal • 0

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RUVSeq RUVnormalize

12 hours ago Ειρήνη • 0

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SIMAT

13 hours ago oliverelijhan 0

11 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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