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0
replies
2.0k
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ComBat using SVA and bladderbatch package
Cancer
sva
Cancer
sva
12.6 years ago
Guest User
★ 13k
0
votes
1
reply
1.9k
views
GenomicRanges flank function with ignore.strand=TRUE
updated 12.6 years ago by
Valerie Obenchain
★ 6.8k • written 12.6 years ago by
Leonard Goldstein
▴ 90
2
votes
5
replies
2.3k
views
rma of oligo feature set crashes R
oligo
oligo
updated 2.8 years ago by
James W. MacDonald
68k • written 12.6 years ago by
Ou, Jianhong
★ 1.3k
0
votes
1
reply
1.6k
views
calcNormFactors in edgeR - quick question from a very inexperienced user
Normalization
edgeR
Normalization
edgeR
updated 12.6 years ago by
Jan Zaucha
▴ 20 • written 12.6 years ago by
Gordon Smyth
53k
0
votes
1
reply
873
views
Problem with cellHTS2 convertWellCoordinates
updated 12.6 years ago by
Joseph Barry
▴ 160 • written 12.6 years ago by
Mark Dane
▴ 40
0
votes
7
replies
1.7k
views
(no subject)
Network
Network
updated 12.6 years ago by
Gordon Smyth
53k • written 12.6 years ago by
abdul rawoof
▴ 60
0
votes
5
replies
4.4k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP
convert
snpMatrix
SNP
convert
snpMatrix
updated 12.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.6 years ago by
Tereza Jezkova UNLV
▴ 20
0
votes
7
replies
1.4k
views
advantages of annotation packages
Annotation
GO
Organism
Annotation
GO
Organism
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Rameswara Sashi Kiran Challa
▴ 30
0
votes
2
replies
1.5k
views
DESeq Normalization Question
Normalization
DESeq
Normalization
DESeq
updated 12.6 years ago by
Ryan C. Thompson
★ 7.9k • written 12.6 years ago by
Stephen Turner
▴ 290
0
votes
3
replies
7.2k
views
libxml2: incompatible library
flowStats
flowStats
updated 12.6 years ago by
Frederico Moraes Ferreira
▴ 100 • written 12.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.0k
views
calcNormFactors in edgeR - quick question from a very inexperienced user
Normalization
edgeR
Normalization
edgeR
12.6 years ago
Jan Zaucha
▴ 20
0
votes
1
reply
2.0k
views
[combat] Error in FUN(newX[, i], ...) : missing observations in cov/c
updated 12.6 years ago by
Marc-Danie Jessica Nazaire
▴ 20 • written 12.6 years ago by
W. Evan Johnson
▴ 870
0
votes
1
reply
824
views
silly question about AnnotationDbi/seqnames.db
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
Tim Triche
★ 4.2k
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray
Annotation
Organism
cdf
db0
probe
annotate
affy
Microarray
Annotation
cdf
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
Ekta Jain
▴ 50
0
votes
1
reply
1.2k
views
Reactome support for more organisms
GO
GO
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
Asta Laiho
▴ 120
0
votes
1
reply
1.2k
views
[combat] Re: Error in FUN(newX[, i], ...) : missing observations in cov/c
updated 12.6 years ago by
Marc-Danie Jessica Nazaire
▴ 20 • written 12.6 years ago by
W. Evan Johnson
▴ 870
0
votes
0
replies
792
views
Enrichment score test in R
12.6 years ago
Duy Ngoc Do
▴ 10
0
votes
1
reply
2.4k
views
node stack overflow
updated 12.6 years ago by
Sean Davis
21k • written 12.6 years ago by
Jingjing Jin
▴ 10
0
votes
0
replies
1.0k
views
where can I obtain the package of hugene20st.db
probe
annotate
probe
annotate
12.6 years ago
Guannan Sun
▴ 10
0
votes
1
reply
1.3k
views
status of visnab
Visualization
ggbio
Gviz
Visualization
ggbio
Gviz
updated 12.6 years ago by
Tengfei Yin
▴ 420 • written 12.6 years ago by
Abhishek Pratap
▴ 410
0
votes
3
replies
1.2k
views
Affymetrix US Rice Gene Strip 1.1
cdf
cdf
updated 12.6 years ago by
James W. MacDonald
68k • written 12.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Error in example from biomaRt vignette
biomaRt
BRAIN
biomaRt
BRAIN
12.6 years ago
Steffen Durinck
▴ 90
0
votes
6
replies
1.7k
views
serious problem with GOstats package
GO
hgu95av2
GOstats
GO
hgu95av2
GOstats
updated 12.6 years ago by
Dan Tenenbaum
★ 8.2k • written 12.6 years ago by
gregory voisin
▴ 430
0
votes
1
reply
1.1k
views
Fwd: Outliers in RNA seq analysis using DESeq2
DESeq2
DESeq2
updated 12.6 years ago by
Michael Love
43k • written 12.6 years ago by
Emma Quinn
▴ 20
0
votes
2
replies
1.4k
views
cellHTS2 and channelNames
cellHTS
cellHTS2
cellHTS
cellHTS2
updated 12.6 years ago by
Wolfgang Huber
★ 13k • written 12.6 years ago by
Mark Dane
▴ 40
0
votes
4
replies
2.5k
views
makeTranscriptDbFromGFF for Unstranded Transcripts
TranscriptDb
TranscriptDb
updated 12.6 years ago by
Hervé Pagès
16k • written 12.6 years ago by
Dario Strbenac
★ 1.6k
0
votes
7
replies
3.5k
views
heatmap with variance stabilizing transformed expression data in DESeq
DESeq
DESeq
updated 12.6 years ago by
Steve Lianoglou
★ 13k • written 12.6 years ago by
Wang, Li
▴ 180
0
votes
2
replies
2.1k
views
QuasR special case alignment
Alignment
genomes
QuasR
Alignment
genomes
QuasR
updated 12.6 years ago by
Ugo Borello
▴ 340 • written 12.6 years ago by
Michael Stadler
▴ 350
0
votes
2
replies
1.5k
views
hyperdraw: How can I control node label font size?
hyperdraw
hyperdraw
updated 12.6 years ago by
Paul Murrell
▴ 30 • written 12.6 years ago by
hettling
▴ 60
0
votes
6
replies
2.1k
views
coverage on very large ReadGappedAlignmentsObject
Coverage
genomes
Coverage
genomes
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Stefanie
▴ 360
0
votes
5
replies
1.5k
views
No $df.residual
updated 12.6 years ago by
Sean Davis
21k • written 12.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
ABarray error
Microarray
Annotation
GO
limma
beadarray
Microarray
Annotation
GO
limma
beadarray
12.7 years ago • updated 12.6 years ago
Mani, Jay
▴ 20
0
votes
2
replies
1.3k
views
DEXSeq: subsetting ExonCountSet ?
DESeq
DEXSeq
DESeq
DEXSeq
updated 12.6 years ago by
Steve Lianoglou
★ 13k • written 12.6 years ago by
Yvan Wenger
▴ 50
0
votes
1
reply
1.2k
views
Problem with biomaRt::getSequence.
updated 12.6 years ago by
Sean Davis
21k • written 12.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
edgeR: Using ratios (translational efficiencies) as input
RNASeq
GO
Cancer
limma
edgeR
RNASeq
GO
Cancer
limma
edgeR
updated 12.6 years ago by
gowtham
▴ 210 • written 12.7 years ago by
Alvaro J. González
▴ 80
0
votes
6
replies
2.1k
views
Design matrix and BCV
GO
edgeR
GO
edgeR
updated 12.6 years ago by
Manoj Hariharan
▴ 110 • written 12.6 years ago by
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
GO evidence codes in org.Xx.egGO
GO
GO
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
Peter Langfelder
★ 3.0k
0
votes
10
replies
3.7k
views
MakeTranscriptDbFromGFF
Annotation
TranscriptDb
Annotation
TranscriptDb
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.7 years ago by
Ugo Borello
▴ 340
0
votes
2
replies
1.3k
views
Install \"xps\" package
updated 12.6 years ago by
James W. MacDonald
68k • written 12.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
flowQ qaProcess fails to run in both Windows and Mac OS: What am I doing wrong?
flowCore
flowViz
flowQ
flowCore
flowViz
flowQ
updated 12.6 years ago by
Dan Tenenbaum
★ 8.2k • written 12.6 years ago by
Guest User
★ 13k
0
votes
3
replies
2.2k
views
retrieving external Gene IDs from TranscriptDB Object
Yeast
TranscriptDb
Yeast
TranscriptDb
updated 12.6 years ago by
Ugo Borello
▴ 340 • written 12.6 years ago by
Stefanie
▴ 360
0
votes
1
reply
2.1k
views
Fwd: feature weights in 'superpc' package
Survival
ASSIGN
Survival
ASSIGN
updated 12.6 years ago by
Tim Triche
★ 4.2k • written 12.6 years ago by
Yukti Choudhury
▴ 10
0
votes
5
replies
2.5k
views
XML package - 500 internal server error
GEOquery
ArrayExpress
GEOquery
ArrayExpress
updated 12.6 years ago by
Sean Davis
21k • written 12.6 years ago by
boczniak767
▴ 740
0
votes
0
replies
2.4k
views
Tukey\'s HSD after ANOVA
GO
BRAIN
GO
BRAIN
12.6 years ago
Guest User
★ 13k
0
votes
3
replies
1.5k
views
Migrating a Large BSgenome Package to R 3.0
BSgenome
BSgenome
BSgenome
BSgenome
updated 12.6 years ago by
Hervé Pagès
16k • written 12.6 years ago by
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.4k
views
Agilent 8x60K Gene Expression Package
Microarray
Normalization
limma
Microarray
Normalization
limma
12.6 years ago
Gordon Smyth
53k
0
votes
0
replies
2.5k
views
DiffBind questions
DiffBind
MMDiff
DiffBind
MMDiff
12.6 years ago
Rory Stark
★ 5.2k
0
votes
0
replies
953
views
Question for DiffBind julian rozenberg
DiffBind
DiffBind
12.6 years ago
Rory Stark
★ 5.2k
0
votes
0
replies
885
views
ComBat
12.6 years ago
W. Evan Johnson
▴ 870
0
votes
0
replies
1.8k
views
Agilent 8x60K Gene Expression Package
Microarray
Normalization
Microarray
Normalization
12.6 years ago
Vandana Sandhu
▴ 10
46,699 results • Page
542 of 934
Recent ...
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
by
TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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