0
votes
1
reply
782
views
Extracting pacient ID from AffyBatch objects
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 10
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2
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1.1k
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Regarding hugene10stv1 array
probe probe
15.7 years ago sneha patil ▴ 220
0
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0
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CGHcall problem
CGH CGHcall CGH CGHcall
15.7 years ago Erik Dassi ▴ 10
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0
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AgiMicroRna readMicroRnaAFE error
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15.7 years ago Christian Ruckert ▴ 170
0
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0
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2.4k
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using biomaRt to query cds coordinates with respect to the transcript for a given gene
biomaRt biomaRt
15.7 years ago Andrew Yee ▴ 350
0
votes
0
replies
1.5k
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CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010
Proteomics CAMERA Proteomics CAMERA
15.7 years ago Amandeep Sidhu ▴ 20
2
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4
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1.6k
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GOstats minus IEA?
GOstats GOstats
updated 15.7 years ago by 6.7k • written 15.7 years ago by ★ 1.0k
0
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1
reply
1.6k
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iFlow
GUI GUI
updated 15.7 years ago by ★ 1.6k • written 15.7 years ago by ▴ 70
0
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0
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990
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Ph.D- Help
GEOquery GEOquery
15.7 years ago Sean Davis 21k
0
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0
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1.2k
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topGO:what is the good way to work out FDR?
GO topGO GO topGO
15.7 years ago jiayu wen ▴ 60
0
votes
9
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2.3k
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htqPCR question
miRNA qPCR limma miRNA qPCR limma
updated 15.7 years ago by ▴ 810 • written 15.7 years ago by ★ 2.0k
0
votes
1
reply
650
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about GO stats
GO GO
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 130
0
votes
2
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1.8k
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GOstats and htmlReport
GO GOstats GO GOstats
updated 15.7 years ago by ★ 7.4k • written 15.7 years ago by ★ 1.0k
0
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0
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1.2k
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Error encountered while using AMORE package. "Error in train.method(net, P, T, show.step)...."
Network Network
15.7 years ago Suyog Pol ▴ 40
0
votes
5
replies
1.9k
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normalisation + sam
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updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 60
0
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3
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1.5k
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pdInfoBuider: how to view SQL scheme?
pdInfoBuilder pdInfoBuilder
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ★ 4.1k
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3
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2.0k
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[maSigPro] How to analyze 2-colour microarrays?
Normalization limma maSigPro Normalization limma maSigPro
updated 15.7 years ago by ▴ 90 • written 15.7 years ago by ▴ 740
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3
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1.1k
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GenomicFeatures.Hsapiens.UCSC.hg19
GenomicFeatures GenomicFeatures
updated 15.7 years ago by ▴ 200 • written 15.7 years ago by ▴ 140
0
votes
1
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1.2k
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exonMap problems
exonmap exonmap
updated 15.7 years ago by ▴ 250 • written 15.7 years ago by ▴ 40
0
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0
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1.0k
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Agi4x44PreProcess_1.6.0 Error in readGenericHeader(fullname, columns = columns, sep = sep) :
mgug4122a limma mgug4122a limma
15.7 years ago francois@sus.mcgill.ca ▴ 90
0
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1
reply
954
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snapCGH genomePlot chrominfo
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 80
0
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1
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1.3k
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Question about quantile normalization in normalize.AffyBatch.quantiles
Normalization probe Normalization probe
updated 15.7 years ago by ★ 1.2k • written 15.7 years ago by ▴ 10
0
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1
reply
1.2k
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Problems using rMAT tutorial
GUI rMAT GUI rMAT
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 50
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0
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qPCR event preview - April 2010
miRNA qPCR Normalization probe microRNA cycle miRNA qPCR Normalization probe microRNA
15.7 years ago qPCR Platform - the reference in real-t… ▴ 170
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0
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1.1k
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package to handle Infinium iSelect HD Custom Genotyping
SNP Normalization crlmm SNP Normalization crlmm
15.7 years ago Ramzi TEMANNI ▴ 160
0
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2
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1.9k
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Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 15.7 years ago by ▴ 450 • written 15.7 years ago by ▴ 80
0
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1
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1.5k
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No changes between Groups using GeneST Arrays from Affymetrix
GO vsn plier GO vsn plier
updated 15.7 years ago by ▴ 230 • written 15.8 years ago by ▴ 830
0
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1
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4.4k
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edgeR: common vs tagwise dispersion
GO edgeR GO edgeR
15.7 years ago Gordon Smyth 53k
0
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3
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1.5k
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XPS: Human Gene 1.0 ST v1 Summarization using Affy Library r4
Annotation xps Annotation xps
updated 15.7 years ago by ★ 3.9k • written 15.7 years ago by ▴ 20
0
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1
reply
1.2k
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Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 15.7 years ago by 68k • written 15.7 years ago by ★ 2.0k
0
votes
8
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3.1k
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Import files from Applied Biosystems 7900HT?
ABarray ABarray
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 30
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4
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1.5k
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HTqPCR only works for 384 qPCR plates
qPCR qPCR
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 810
0
votes
2
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1.2k
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HTqPCR version and plotCtOverview scaling errors
HTqPCR HTqPCR
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 420
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1
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1.5k
views
edgeR: common vs tagwise dispersion
edgeR edgeR
updated 15.7 years ago by ★ 1.1k • written 15.7 years ago by ▴ 340
0
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1
reply
982
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R courses ***May-June 2010*** R Programming Essentials and Advanced Techniques by XLSolutions in USA Cities
15.7 years ago sue@xlsolutions-corp.com ▴ 570
0
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1
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981
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ChIPpeakAnno BED2RangedData
ChIPpeakAnno ChIPpeakAnno
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 10
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votes
11
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2.5k
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loop over IRanges spaces
updated 15.7 years ago by ★ 11k • written 15.7 years ago by ▴ 60
0
votes
12
replies
3.0k
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Bioconductor - hugene10stv1cdf not available
cdf cdf
15.7 years ago Christoph Knapp ▴ 70
0
votes
0
replies
876
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sequence analysis tutorial
15.7 years ago Weiwei Shi ▴ 10
0
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0
replies
1.3k
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hugene10stv1cdf
Preprocessing cdf Preprocessing cdf
15.7 years ago Anthony Bosco ▴ 500
0
votes
1
reply
1.1k
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crlmm and HumanAffy250K SNP
SNP affy SNP affy
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 80
0
votes
1
reply
2.6k
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KEGG Pathway modules
updated 15.7 years ago by ★ 7.2k • written 15.8 years ago by ▴ 60
0
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4
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1.7k
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Reg: GSEA
GO limma GO limma
updated 15.7 years ago by ▴ 400 • written 15.7 years ago by ▴ 170
0
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0
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1.5k
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ATTN: Clark Wilson filtering for present calls
limmaGUI limmaGUI
15.7 years ago Sinha, Mala ▴ 10
0
votes
1
reply
1.3k
views
hugene10stv1cdf
cdf cdf
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 70
0
votes
0
replies
1.4k
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GeneMeta for 2 color microarray
Microarray limma GeneMeta Microarray limma GeneMeta
15.7 years ago Paul Leo ▴ 970
0
votes
1
reply
1.4k
views
error in loading 'org.Hs.eg.db'
updated 15.7 years ago by ★ 7.4k • written 15.7 years ago by ▴ 60
0
votes
0
replies
947
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COURSES : Intro to R / Microarray Analysis Using R at Imperial College, LONDON
Microarray Microarray
15.7 years ago North, Bernard V ▴ 120
0
votes
5
replies
1.5k
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comparison of two sets of developmental study
Microarray Microarray
updated 15.7 years ago by ★ 13k • written 15.8 years ago by ▴ 80
0
votes
0
replies
800
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Affymetrix differential genes
GO GO
15.7 years ago santana sarma ▴ 80
46,719 results • Page 674 of 935
Recent ...
Replies
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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