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0
replies
1.5k
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ATTN: Clark Wilson filtering for present calls
limmaGUI
limmaGUI
15.8 years ago
Sinha, Mala
▴ 10
0
votes
1
reply
1.3k
views
hugene10stv1cdf
cdf
cdf
updated 15.8 years ago by
James W. MacDonald
68k • written 15.8 years ago by
Christoph Knapp
▴ 70
0
votes
0
replies
1.4k
views
GeneMeta for 2 color microarray
Microarray
limma
GeneMeta
Microarray
limma
GeneMeta
15.8 years ago
Paul Leo
▴ 970
0
votes
1
reply
1.4k
views
error in loading 'org.Hs.eg.db'
updated 15.8 years ago by
Seth Falcon
★ 7.4k • written 15.8 years ago by
LIYUN
▴ 60
0
votes
0
replies
948
views
COURSES : Intro to R / Microarray Analysis Using R at Imperial College, LONDON
Microarray
Microarray
15.8 years ago
North, Bernard V
▴ 120
0
votes
5
replies
1.5k
views
comparison of two sets of developmental study
Microarray
Microarray
updated 15.8 years ago by
Steve Lianoglou
★ 13k • written 15.8 years ago by
yan zhou
▴ 80
0
votes
0
replies
800
views
Affymetrix differential genes
GO
GO
15.8 years ago
santana sarma
▴ 80
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 86, Issue 19
cdf
affy
oligo
cdf
affy
oligo
15.8 years ago
Sherri Christian
▴ 20
0
votes
1
reply
1.0k
views
EBImage
EBImage
EBImage
updated 15.8 years ago by
Gregoire Pau
▴ 310 • written 15.8 years ago by
R.Heberto Ghezzo
▴ 20
0
votes
1
reply
1.1k
views
Error in setQCEnvironment(cdfn)-reg
Microarray
cdf
Microarray
cdf
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
NUTAN CHAUHAN
▴ 20
0
votes
1
reply
809
views
load all data sets in a package
updated 15.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.8 years ago by
carol white
▴ 680
0
votes
0
replies
908
views
[R] Poblems wih EBImage
convert
EBImage
convert
EBImage
15.8 years ago
Gregoire Pau
▴ 310
0
votes
1
reply
1.5k
views
analysis of differential expression of small RNAs sequences
RNASeq
DESeq
RNASeq
DESeq
updated 15.8 years ago by
Simon Anders
★ 3.8k • written 15.8 years ago by
Andreia Fonseca
▴ 810
0
votes
2
replies
3.0k
views
NA/NaN/Inf in foreign function call in mas5calls function
probe
affy
PROcess
probe
affy
PROcess
updated 15.8 years ago by
James W. MacDonald
68k • written 15.8 years ago by
Karthik Ramaswamy Padmanabhan
▴ 10
0
votes
0
replies
912
views
BioC 2010, July (28), 29 and 30
Cancer
Cancer
15.8 years ago
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Error on se.exprs(sample.ExpressionSet)
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Peng Yu
▴ 950
0
votes
0
replies
808
views
Eleonore Gravier/CURIE est absent(e).
15.8 years ago
Eleonore Gravier/CURIE
▴ 50
0
votes
3
replies
1.5k
views
Memory and vector size management on linux 64bit
Microarray
lumi
Microarray
lumi
updated 15.8 years ago by
Benilton Carvalho
★ 4.3k • written 15.8 years ago by
Manca Marco PATH
▴ 200
0
votes
1
reply
1.1k
views
Bug in IRanges package?
updated 15.8 years ago by
Patrick Aboyoun
★ 1.6k • written 15.8 years ago by
Jim Nemesh
▴ 10
0
votes
0
replies
778
views
MAList
15.8 years ago
Sean Davis
21k
0
votes
1
reply
1.2k
views
Extract a subset of an MAList object
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Mohamed Lajnef
▴ 250
0
votes
2
replies
3.6k
views
an error in normalize.quantiles {preprocessCore} function?
Normalization
Normalization
updated 15.8 years ago by
Ben Bolstad
★ 1.2k • written 15.8 years ago by
697820169
▴ 20
0
votes
2
replies
1.9k
views
About qsub -q highmem
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
sisitzq@gmail.com
▴ 50
0
votes
0
replies
780
views
Illumina Infinium Background
Microarray
Microarray
15.8 years ago
Gildas Mazo
▴ 10
0
votes
0
replies
902
views
Limma design matrix contrast
affy
limma
affy
limma
15.8 years ago
Timothy Wu
▴ 120
0
votes
1
reply
1.4k
views
Agi4x44PreProcess_1.6.0 Error in readGenericHeader(fullname, columns = columns, sep = sep) :
mgug4122a
limma
mgug4122a
limma
updated 15.8 years ago by
francois@sus.mcgill.ca
▴ 90 • written 15.8 years ago by
Turner, Julia
▴ 20
0
votes
0
replies
1.3k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
15.8 years ago
Simon Anders
★ 3.8k
0
votes
4
replies
1.5k
views
limma topTable columns and new interface?
affy
limma
affy
limma
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Timothy Wu
▴ 120
0
votes
3
replies
2.4k
views
Adjusting contrast in a heatmap
Clustering
Clustering
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Anthony Ferrari
▴ 110
0
votes
1
reply
2.0k
views
Plotting trees - hclust object vs dendrogram
Clustering
Clustering
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Anthony Ferrari
▴ 110
0
votes
3
replies
1.4k
views
quality assessment of microarray using arrayQualityMetrics
Microarray
Normalization
arrayQualityMetrics
Microarray
Normalization
arrayQualityMetrics
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Amit Kumar
▴ 70
0
votes
0
replies
1.2k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
15.8 years ago
Jinfeng Liu
▴ 10
0
votes
1
reply
1.1k
views
vennSelect problem with hgu133plus package
hgu133plus2
hgu133plus2
updated 15.8 years ago by
James W. MacDonald
68k • written 15.8 years ago by
Maxim
▴ 170
0
votes
3
replies
1.9k
views
genefilter findLargest and Illumina ids
Annotation
Category
Annotation
Category
updated 15.8 years ago by
Pan Du
★ 1.2k • written 15.8 years ago by
Lavinia Gordon
▴ 480
0
votes
1
reply
1.3k
views
Problem writing large FCS files using write.FCS in flowCore 1.12.0
flowCore
flowCore
updated 15.8 years ago by
Nishant Gopalakrishnan
▴ 340 • written 15.8 years ago by
Robert Bruggner
▴ 20
0
votes
1
reply
906
views
KEGG overrepresentation loses genes
Annotation
Category
Annotation
Category
updated 15.8 years ago by
Marc Carlson
★ 7.2k • written 15.8 years ago by
Anne Kupczok
▴ 10
0
votes
0
replies
1.2k
views
Qpgraph error msg
qpgraph
qpgraph
15.8 years ago
Robert Castelo
★ 3.4k
0
votes
3
replies
1.6k
views
how to find the list of probe sets in Affy U133A that correspond to housekeeping genes
Normalization
probe
affy
Normalization
probe
affy
updated 15.8 years ago by
Marc Carlson
★ 7.2k • written 15.8 years ago by
James Anderson
▴ 820
0
votes
0
replies
1.0k
views
R/BioC/Mac keeps going and going
maanova
maanova
15.8 years ago
Loren Engrav
★ 1.0k
0
votes
1
reply
903
views
iFLow
iFlow
iFlow
updated 15.8 years ago by
Steve Lianoglou
★ 13k • written 15.8 years ago by
Abbhirami Rajagopal
▴ 70
0
votes
6
replies
2.0k
views
Reg: PCA in bioconductor
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Rohit Farmer
▴ 170
0
votes
0
replies
1.2k
views
Colouring limma MA plot
limma
limma
15.8 years ago
Gordon Smyth
53k
0
votes
3
replies
1.5k
views
Reg: Different clustering methods available for affy data
Clustering
Clustering
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Rohit Farmer
▴ 170
0
votes
1
reply
1.6k
views
Colouring limma MA plot
limma
limma
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
adam_pgsql
▴ 70
0
votes
2
replies
4.0k
views
using Blat in R
Alignment
PROcess
Alignment
PROcess
updated 15.8 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 15.8 years ago by
Fahim Md
▴ 250
0
votes
0
replies
1.1k
views
Advanced R Programming for Bioinformatics, May 20-21
Cancer
Cancer
15.8 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
[A question on goseq package with UCSC known gene ID]
GO
goseq
GO
goseq
15.8 years ago
sunghee OH
▴ 50
0
votes
6
replies
2.1k
views
query and subject hits in findOverlaps through different space names
IRanges
IRanges
updated 15.8 years ago by
Michael Lawrence
★ 11k • written 15.8 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
1.0k
views
normalization between different microarray
updated 15.8 years ago by
Paul Leo
▴ 970 • written 15.8 years ago by
chittabrata mal
▴ 50
0
votes
3
replies
2.4k
views
Help please: FCS binary to ascii text using bioconductor
updated 15.8 years ago by
Josef Spidlen
▴ 140 • written 15.8 years ago by
David Lyon
▴ 340
46,726 results • Page
675 of 935
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Answer: Are individual-mouse-based statistics possible in CellChat?
by
ATpoint
★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
by
ATpoint
★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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