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Answer: all variables in design formula must be columns in colData (Deseq2) error
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ATpoint
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Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button.
Generally, colData(dds) must…
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Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
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Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
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Hi,
I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation.
Thanks a lot for replying so quickly!
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