Bioconductor Annotation

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323

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 21 days ago by Tim Peters ▴ 170 • written 29 days ago by s.malik • 0

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208

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clusterProfiler annotation gseGO gsea OrgDb

updated 5 weeks ago by Guido Hooiveld ★ 3.9k • written 5 weeks ago by enee ▴ 10

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166

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ChIPSeq annotation ChIPpeakAnno

12 weeks ago nilanjanamani88 • 0

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2.0k

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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4.2k

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annotation

written 8.9 years ago by seeker • 0

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451

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 7 months ago by Basti ▴ 780 • written 7 months ago by titangerd • 0

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390

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db0 release Annotation

7 months ago kayla.interdonato ▴ 160

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3.5k

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Bioconductor Annotation Ann

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Aytaç • 0

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667

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MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by rodj5201 • 0

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932

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Annotation biomaRt

11 months ago RuBBiT0 ▴ 10

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707

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IlluminaHumanMethylationEPICmanifest ChAMP annotation

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by Matilda • 0

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1.2k

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Annotation

11 months ago Michael Steinbaugh ▴ 90

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960

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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2.0k

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ChIPQC annotation rn6

updated 4 months ago by Raghavaram • 0 • written 3.6 years ago by Frédéric Crémazy • 0

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1.6k

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software error annotation

written 4.2 years ago by alan.g.hudson • 0

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1.4k

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Annotation pathview Annotation pathview

written 9.8 years ago by Luo Weijun ★ 1.6k

16 results • Page 1 of 1

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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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