Bioconductor AnnotationHub

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5.1k

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BiocFileCache AnnotationHub ExperimentHub

6 months ago • updated 24 days ago shepherl 3.9k

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5.7k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 6 hours ago by Daniele • 0 • written 5.5 years ago by Guido Hooiveld ★ 4.0k

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361

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 5 weeks ago by Tim Peters ▴ 180 • written 6 weeks ago by s.malik • 0

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369

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 11 weeks ago by Michael Love 42k • written 11 weeks ago by Filipe • 0

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183

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annotatr AnnotationHub

3 months ago hayleyw • 0

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4.5k

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AnnotationHub AnnotationForge Pseudomonas_aeruginosa

updated 5 months ago by James W. MacDonald 65k • written 17 months ago by Manmohit ▴ 10

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clusterProfiler Annotationhub

updated 6 months ago by Guido Hooiveld ★ 4.0k • written 6 months ago by BS • 0

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593

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tximeta AnnotationHub AnnotationHubData

7 months ago Thon • 0

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5.9k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 9 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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5.0k

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3.3 years ago by Alberto • 0

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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