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Annotationhub
•
reset
0
votes
3
replies
488
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub
AnnotationDbi
AnnotationForge
9 weeks ago
Anna
• 0
1
vote
5
replies
588
views
EnsDb: bad_weak_ptr
AnnotationHub
BiocFileCache
3 months ago
Lluís Revilla Sancho
▴ 750
0
votes
5
replies
819
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 3 months ago by
shepherl
4.0k • written 3 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
225
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
3 months ago
shepherl
4.0k
1
vote
1
reply
325
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 4 months ago by
James W. MacDonald
67k • written 4 months ago by
Tim Barry
• 0
6
votes
12
replies
6.5k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
11 months ago • updated 5 months ago
shepherl
4.0k
10
votes
41
replies
7.1k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 4 months ago by
Daniele
• 0 • written 5.9 years ago by
Guido Hooiveld
★ 4.1k
1
vote
6
replies
822
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 6 months ago by
Tim Peters
▴ 200 • written 6 months ago by
s.malik
• 0
2
votes
1
reply
616
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon
clusterPro
Salmosalar
AnnotationHub
GeneOntology
updated 7 months ago by
Michael Love
42k • written 7 months ago by
Filipe
• 0
0
votes
0
replies
364
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
8 months ago
hayleyw
• 0
2
votes
28
replies
5.2k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub
AnnotationForge
Pseudomonas_aeruginosa
updated 10 months ago by
James W. MacDonald
67k • written 22 months ago by
Manmohit
▴ 10
3
votes
4
replies
1.7k
views
Annotation hub and clusterProfiler errors
clusterProfiler
Annotationhub
updated 11 months ago by
Guido Hooiveld
★ 4.1k • written 11 months ago by
BS
• 0
1
vote
2
replies
866
views
AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
12 months ago
Thon
• 0
9
votes
14
replies
7.2k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 12 weeks ago by
shepherl
4.0k • written 2.7 years ago by
jon.klonowski
▴ 40
3
votes
11
replies
5.8k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 8 months ago by
Guido Hooiveld
★ 4.1k • written 3.7 years ago by
Alberto
• 0
0
votes
2
replies
1.2k
views
AnnotationHub not working
annotation
AnnotationHub
written 7.2 years ago by
genprabir106
• 0
16 results • Page
1 of 1
Recent ...
Replies
Answer: featureCounts fails to load annotation file
by
Yang Liao
▴ 440
Hi Yasmin, I'm following up on the issue you're having with featureCounts and the GRCh38 RefSeq annotation. I've been testing featureCounts…
Answer: How to adjust the DESeq2 formula when there is no control group for one factor?
by
swbarnes2
★ 1.4k
You are overthinking this. You have two time points, you compare them to each other. You can't compare them to a time point you don't hav…
Answer: Biostrings: Error writing long reads (>200kbps) with writeQualityScaledXStringSe
by
Aidan
▴ 40
As far as I am aware, the restriction is historical..having a fixed buffer size in the internal C methods makes the algorithms a little sim…
Comment: Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ?
by
rohitsatyam102
▴ 20
I am facing a similar issue.
Answer: How to subset voomLmFit (MArrayLM) object?
by
Gordon Smyth
51k
Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…
Votes
A: eBayes warning: zero sample variances
A: eBayes warning: zero sample variances
Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
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Gordon Smyth
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Gerhard Thallinger
▴ 180
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rohitsatyam102
▴ 20
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James W. MacDonald
67k
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Dorien
▴ 10
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