Showing : BLAST • reset
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Visualize blastx output in R
blast
21 months ago kvigil • 0
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2
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1.6k
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blastn for selected database and/or organism
blast blastsequences
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 40
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1.1k
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batch blast matrix of protein sequences from R
R blast blastsequences protein
6.8 years ago andres.susrud • 0
1
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2
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2.4k
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blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
3
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8
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8.9k
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Which package to run blast
blast
updated 8.2 years ago by ★ 1.6k • written 8.3 years ago by ▴ 20
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After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings blast variantannotation
8.3 years ago li lilingdu ▴ 450
0
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1.7k
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Primer-blast with bioconductor packages
primer blast
updated 8.5 years ago by 16k • written 8.5 years ago by ▴ 40
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5
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6.1k
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Blastp - through R
blast R
8.8 years ago maahpishanu • 0
4
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13
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4.9k
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How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
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BLAST export library 'annotate'
blast annotate biostrings export fasta
10.0 years ago b.stielow • 0
4
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3
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5.1k
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Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 10.1 years ago by ★ 7.2k • written 10.1 years ago by ▴ 260
11 results • Page 1 of 1
Recent ...
Replies
Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 870
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal by maripane • 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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