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BLAST
•
reset
0
votes
0
replies
674
views
Visualize blastx output in R
blast
3.0 years ago
kvigil
• 0
1
vote
2
replies
1.9k
views
blastn for selected database and/or organism
blast
blastsequences
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
aush
▴ 40
0
votes
0
replies
1.4k
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
8.0 years ago
andres.susrud
• 0
1
vote
2
replies
2.9k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
ariel.hecht
• 0
3
votes
8
replies
10k
views
Which package to run blast
blast
updated 9.5 years ago by
Malcolm Cook
★ 1.6k • written 9.5 years ago by
biomiha
▴ 20
0
votes
0
replies
1.2k
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
9.5 years ago
li lilingdu
▴ 450
0
votes
1
reply
2.3k
views
Primer-blast with bioconductor packages
primer
blast
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
7.5k
views
Blastp - through R
blast
R
10.0 years ago
maahpishanu
• 0
4
votes
13
replies
6.3k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 10.6 years ago by
Martin Morgan
25k • written 10.6 years ago by
Mathilde
• 0
2
votes
2
replies
2.5k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
11.2 years ago
b.stielow
• 0
4
votes
3
replies
5.8k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 11.3 years ago by
Marc Carlson
★ 7.2k • written 11.4 years ago by
Jon Bråte
▴ 270
11 results • Page
1 of 1
Recent ...
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Comment: Chip Seq Analysis of RNA Polymerase 2
by
Tikaaaq2c
• 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
Tikaaaq2c
• 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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Steve Lianoglou
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fl
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