Showing : BLAST • reset
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Visualize blastx output in R
blast
2.7 years ago kvigil • 0
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2
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1.8k
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blastn for selected database and/or organism
blast blastsequences
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 40
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1.3k
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batch blast matrix of protein sequences from R
R blast blastsequences protein
7.7 years ago andres.susrud • 0
1
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2
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2.7k
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blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
3
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8
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9.9k
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Which package to run blast
blast
updated 9.1 years ago by ★ 1.6k • written 9.1 years ago by ▴ 20
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After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings blast variantannotation
9.2 years ago li lilingdu ▴ 450
0
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2.1k
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Primer-blast with bioconductor packages
primer blast
updated 9.4 years ago by 16k • written 9.4 years ago by ▴ 40
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5
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7.1k
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Blastp - through R
blast R
9.7 years ago maahpishanu • 0
4
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13
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5.8k
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How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 10.2 years ago by 25k • written 10.2 years ago by • 0
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2.3k
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BLAST export library 'annotate'
blast annotate biostrings export fasta
10.9 years ago b.stielow • 0
4
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3
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5.6k
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Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 270
11 results • Page 1 of 1
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Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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