Showing : BLAST • reset
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Visualize blastx output in R
blast
2.8 years ago kvigil • 0
1
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2
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1.8k
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blastn for selected database and/or organism
blast blastsequences
updated 7.5 years ago by 68k • written 7.5 years ago by ▴ 40
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1.3k
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batch blast matrix of protein sequences from R
R blast blastsequences protein
7.8 years ago andres.susrud • 0
1
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2
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2.7k
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blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
3
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8
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10.0k
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Which package to run blast
blast
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by ▴ 20
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After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings blast variantannotation
9.3 years ago li lilingdu ▴ 450
0
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1
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2.1k
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Primer-blast with bioconductor packages
primer blast
updated 9.5 years ago by 16k • written 9.5 years ago by ▴ 40
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5
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7.2k
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Blastp - through R
blast R
9.8 years ago maahpishanu • 0
4
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13
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5.9k
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How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 10.4 years ago by 25k • written 10.4 years ago by • 0
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2
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2.3k
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BLAST export library 'annotate'
blast annotate biostrings export fasta
11.0 years ago b.stielow • 0
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3
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5.7k
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Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 11.1 years ago by ★ 7.2k • written 11.1 years ago by ▴ 270
11 results • Page 1 of 1
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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