Bioconductor BLAST

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blast

2.7 years ago kvigil • 0

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blast blastsequences

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by aush ▴ 40

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R blast blastsequences protein

7.8 years ago andres.susrud • 0

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annotate blastSequences BLAST https

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by ariel.hecht • 0

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blast

updated 9.2 years ago by Malcolm Cook ★ 1.6k • written 9.2 years ago by biomiha ▴ 20

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Biostrings blast variantannotation

9.2 years ago li lilingdu ▴ 450

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primer blast

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by Vinicius Henrique da Silva ▴ 40

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7.2k

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blast R

9.7 years ago maahpishanu • 0

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annotation blast biostrings

updated 10.3 years ago by Martin Morgan 25k • written 10.3 years ago by Mathilde • 0

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blast annotate biostrings export fasta

11.0 years ago b.stielow • 0

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5.7k

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GO BLAST annotation

updated 11.1 years ago by Marc Carlson ★ 7.2k • written 11.1 years ago by Jon Bråte ▴ 270

11 results • Page 1 of 1

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Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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