Showing : BLAST • reset
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Visualize blastx output in R
blast
2.8 years ago kvigil • 0
1
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2
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1.8k
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blastn for selected database and/or organism
blast blastsequences
updated 7.6 years ago by 68k • written 7.6 years ago by ▴ 40
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1.3k
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batch blast matrix of protein sequences from R
R blast blastsequences protein
7.9 years ago andres.susrud • 0
1
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2
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2.7k
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blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 9.2 years ago by 25k • written 9.2 years ago by • 0
3
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8
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10k
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Which package to run blast
blast
updated 9.3 years ago by ★ 1.6k • written 9.3 years ago by ▴ 20
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After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings blast variantannotation
9.3 years ago li lilingdu ▴ 450
0
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2.1k
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Primer-blast with bioconductor packages
primer blast
updated 9.6 years ago by 16k • written 9.6 years ago by ▴ 40
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5
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7.2k
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Blastp - through R
blast R
9.9 years ago maahpishanu • 0
4
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13
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6.0k
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How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 10.4 years ago by 25k • written 10.4 years ago by • 0
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2.4k
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BLAST export library 'annotate'
blast annotate biostrings export fasta
11.1 years ago b.stielow • 0
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3
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5.7k
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Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 11.2 years ago by ★ 7.2k • written 11.2 years ago by ▴ 270
11 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
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Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
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