Bioconductor BLAST

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646

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blast

2.8 years ago kvigil • 0

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1.8k

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blast blastsequences

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by aush ▴ 40

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R blast blastsequences protein

7.9 years ago andres.susrud • 0

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annotate blastSequences BLAST https

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by ariel.hecht • 0

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blast

updated 9.3 years ago by Malcolm Cook ★ 1.6k • written 9.3 years ago by biomiha ▴ 20

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Biostrings blast variantannotation

9.3 years ago li lilingdu ▴ 450

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primer blast

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by Vinicius Henrique da Silva ▴ 40

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blast R

9.8 years ago maahpishanu • 0

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annotation blast biostrings

updated 10.4 years ago by Martin Morgan 25k • written 10.4 years ago by Mathilde • 0

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blast annotate biostrings export fasta

11.1 years ago b.stielow • 0

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5.7k

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GO BLAST annotation

updated 11.2 years ago by Marc Carlson ★ 7.2k • written 11.2 years ago by Jon Bråte ▴ 270

11 results • Page 1 of 1

Recent ...

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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