Biostar Blast

Showing : blast • reset

vote

replies

823

views

blast blastsequences

updated 4.0 years ago by James W. MacDonald 59k • written 4.0 years ago by aush ▴ 40

votes

replies

533

views

R blast blastsequences protein

4.3 years ago andres.susrud • 0

vote

replies

1.5k

views

annotate blastSequences BLAST https

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by ariel.hecht • 0

votes

replies

6.4k

views

blast

updated 5.7 years ago by Malcolm Cook ★ 1.6k • written 5.7 years ago by biomiha ▴ 20

votes

replies

567

views

Biostrings blast variantannotation

5.8 years ago li lilingdu ▴ 450

votes

913

views

primer blast

updated 6.0 years ago by Hervé Pagès 15k • written 6.0 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

3.3k

views

blast R

6.3 years ago maahpishanu • 0

votes

replies

3.0k

views

annotation blast biostrings

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by Mathilde • 0

votes

replies

1.2k

views

blast annotate biostrings export fasta

7.5 years ago b.stielow • 0

votes

replies

3.7k

views

GO BLAST annotation

updated 7.6 years ago by Marc Carlson ★ 7.2k • written 7.6 years ago by Jon Bråte ▴ 180

10 results • Page 1 of 1

Recent ...

Replies

Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…

Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0

I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…

Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0

Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…

Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k

Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…

Comment: Handling of missing values in limma by Gordon Smyth 45k

limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…

Votes

A: redundant probe sets in Affymetrix HG-U219

Answer: Quantile Normalization after rma or not?

Answer: Using featureCounts and downloading Rsubread

Answer: different results in DESeq2 when comparing groups in two ways

Awards • All

Scholar to James W. MacDonald 59k