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blast
•
reset
0
votes
0
replies
351
views
Visualize blastx output in R
blast
14 months ago
kvigil
• 0
1
vote
2
replies
1.3k
views
blastn for selected database and/or organism
blast
blastsequences
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
aush
▴ 40
0
votes
0
replies
921
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
6.3 years ago
andres.susrud
• 0
1
vote
2
replies
2.2k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
ariel.hecht
• 0
3
votes
8
replies
8.3k
views
Which package to run blast
blast
updated 7.7 years ago by
Malcolm Cook
★ 1.6k • written 7.7 years ago by
biomiha
▴ 20
0
votes
0
replies
844
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
7.7 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.5k
views
Primer-blast with bioconductor packages
primer
blast
updated 7.9 years ago by
Hervé Pagès
16k • written 8.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
5.5k
views
Blastp - through R
blast
R
8.2 years ago
maahpishanu
• 0
4
votes
13
replies
4.4k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Mathilde
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.5 years ago
b.stielow
• 0
4
votes
3
replies
4.8k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 9.5 years ago by
Marc Carlson
★ 7.2k • written 9.6 years ago by
Jon Bråte
▴ 250
11 results • Page
1 of 1
Recent ...
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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Gordon Smyth
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