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blast
•
reset
0
votes
0
replies
198
views
Visualize blastx output in R
blast
7 months ago
kvigil
• 0
1
vote
2
replies
1.1k
views
blastn for selected database and/or organism
blast
blastsequences
updated 5.4 years ago by
James W. MacDonald
63k • written 5.4 years ago by
aush
▴ 40
0
votes
0
replies
778
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
5.7 years ago
andres.susrud
• 0
1
vote
2
replies
1.9k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
ariel.hecht
• 0
3
votes
8
replies
7.6k
views
Which package to run blast
blast
updated 7.1 years ago by
Malcolm Cook
★ 1.6k • written 7.1 years ago by
biomiha
▴ 20
0
votes
0
replies
748
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
7.1 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.3k
views
Primer-blast with bioconductor packages
primer
blast
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
5.0k
views
Blastp - through R
blast
R
7.6 years ago
maahpishanu
• 0
4
votes
13
replies
4.0k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Mathilde
• 0
2
votes
2
replies
1.6k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
8.9 years ago
b.stielow
• 0
4
votes
3
replies
4.4k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 9.0 years ago by
Marc Carlson
★ 7.2k • written 9.0 years ago by
Jon Bråte
▴ 250
11 results • Page
1 of 1
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Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Answer: Remove duplicates of colData in TreeSummarizedExperiment
by
Michael Love
40k
Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…
Comment: DataFrame Construction With Non-standard Column
by
James W. MacDonald
63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Votes
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
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Wolfgang Huber
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