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Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
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A
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updated 12 months ago by
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Recent ...
Replies
Comment: Italicise
by
Pau
•
0
They're the same:
example of the vignette: "italic('VCAM1')"
and result from my data: "italic('CARS1')"
As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
•
0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
•
0
I found the reason, because some gene expression levels are 0 in all samples.
you can add these code to check the data:
>exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
•
0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
•
0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
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