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Bioconductor
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News:
Deadline Extended: EuroBioC2026 Call for Abstracts
Bioconductor
Conference
1 day ago
laurah ondari
• 0
0
votes
2
replies
257
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 7 days ago by
LillianaVolkman99
• 0 • written 17 days ago by
Omer
• 0
0
votes
1
reply
111
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
written 15 days ago by
laurah ondari
• 0
0
votes
0
replies
228
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
18 days ago
srkingwu
• 0
1
vote
1
reply
159
views
News:
Bioconductor Maintainer Application
maintainer
policy
Bioconductor
Devel
devel
written 22 days ago by
shepherl
4.3k
0
votes
1
reply
362
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 6 months ago by
Wei Shi
★ 3.6k
2
votes
3
replies
243
views
please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Bioconductor
written 26 days ago by
Victor
▴ 10
0
votes
1
reply
297
views
News:
Opportunity to host EuroBioC2026 Preconference workshops!
Conference
Workshop
Bioconductor
written 6 weeks ago by
laurah ondari
• 0
0
votes
1
reply
379
views
News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
written 9 weeks ago by
laurah ondari
• 0
3
votes
5
replies
576
views
upstream git branches of bioc-release
Bioconductor
written 9 weeks ago by
Jeroen
▴ 10
0
votes
1
reply
467
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 10 weeks ago by
Kevin Blighe
★ 4.0k • written 6 months ago by
Sabina
• 0
0
votes
2
replies
540
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 8 weeks ago by
MarcHintz99
• 0 • written 4 months ago by
Rui
• 0
0
votes
2
replies
666
views
Problem with the TMB plot
Bioconductor
written 4 months ago by
nayanajose
• 0
2
votes
3
replies
602
views
DESeq2 design for haplotype MPRA
Bioconductor
written 3 months ago by
Rita
• 0
0
votes
0
replies
346
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
updated 10 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
jalte.jelsing
• 0
0
votes
2
replies
297
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 10 weeks ago by
Guido Hooiveld
★ 4.1k • written 11 weeks ago by
Stephen Piccolo
▴ 600
1
vote
0
replies
138
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
11 weeks ago
Maria Doyle
▴ 110
0
votes
2
replies
383
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
written 4 months ago by
sikora
• 0
1
vote
2
replies
501
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 12 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Joseph
• 0
1
vote
2
replies
495
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
updated 12 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
nadia
• 0
2
votes
2
replies
636
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
4 months ago • updated 11 weeks ago
Matthew Thornton
▴ 390
0
votes
3
replies
320
views
Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 12 weeks ago by
m.c.ruma
• 0
1
vote
4
replies
467
views
"Watched Tags" are being erased rather than updated
Bioconductor
updated 10 weeks ago by
RalphSavage99
• 0 • written 3 months ago by
jessica.anderson
▴ 10
0
votes
1
reply
262
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 12 weeks ago by
Michael Love
43k • written 3 months ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.2k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.9 years ago by
Maria Doyle
▴ 110
0
votes
0
replies
12
views
Spam:
The Neon Code PolyTrack
Bioconductor
3 months ago
residentialplayt
0
2
votes
1
reply
664
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 3 months ago by
shepherl
4.3k
0
votes
1
reply
553
views
News:
Save the Date: BioC2026
Bioconductor
written 3 months ago by
shepherl
4.3k
0
votes
3
replies
290
views
Using DESeq2 for age prediction
Bioconductor
updated 3 months ago by
ATpoint
★ 5.0k • written 3 months ago by
picasa1983
• 0
4
votes
3
replies
655
views
DESeq2 for candidate gene analysis
Bioconductor
written 4 months ago by
piffelpaff
▴ 20
0
votes
3
replies
362
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
3 months ago
ubjw24
• 0
0
votes
3
replies
499
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
4 months ago • updated 3 months ago
Gabriel
• 0
0
votes
1
reply
204
views
Gatins Set error
flowCore
Bioconductor
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
yoav.lubelsky
• 0
0
votes
1
reply
271
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 4 months ago by
s.samarajiwa
• 0
0
votes
1
reply
893
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
written 4 months ago by
shepherl
4.3k
1
vote
2
replies
384
views
Error Loading Experiment from SimBenchData Package
Bioconductor
4 months ago • updated 3 months ago
ksankaran
• 0
0
votes
3
replies
415
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 4 months ago by
Aaron Lun
★ 29k • written 4 months ago by
Stephen Piccolo
▴ 600
0
votes
6
replies
691
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
Skyler
• 0
0
votes
1
reply
234
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 4 months ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
421
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 6 months ago by
shepherl
4.3k
0
votes
3
replies
2.5k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 7 months ago by
Gordon Smyth
53k • written 7 months ago by
anni
• 0
0
votes
2
replies
1.1k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 7 months ago by
ATpoint
★ 5.0k • written 7 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 7 months ago by
Hadi
• 0 • written 4.5 years ago by
charlotte
▴ 10
0
votes
0
replies
384
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
8 months ago
Gordon Smyth
53k
0
votes
4
replies
9.3k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.4 years ago by
Aytaç
• 0
0
votes
2
replies
631
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 5 months ago by
Liona
• 0 • written 8 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
533
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 8 months ago by
ATpoint
★ 5.0k • written 8 months ago by
yob4003
• 0
0
votes
2
replies
872
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 9 months ago by
XFWu
• 0
1
vote
5
replies
1.9k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 10 months ago by
slizchap
• 0
0
votes
5
replies
2.8k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 23 months ago by
Maria Doyle
▴ 110
917 results • Page
1 of 19
Recent ...
Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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