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Showing :
BiomaRt
•
reset
4
votes
5
replies
888
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus
biomaRt
updated 14 hours ago by
Jason
• 0 • written 15 days ago by
Benjamin
▴ 20
0
votes
0
replies
116
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
26 days ago
Ensembl_Jorge
• 0
0
votes
1
reply
247
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 6 weeks ago by
Mike Smith
★ 6.6k • written 6 weeks ago by
Abiologist
• 0
2
votes
2
replies
1.2k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
7 weeks ago • updated 6 weeks ago
2044291597
• 0
1
vote
3
replies
811
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 10 weeks ago by
James W. MacDonald
67k • written 9 months ago by
Pez
▴ 10
1
vote
4
replies
695
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN
biomaRt
updated 6 days ago by
Adam
• 0 • written 10 weeks ago by
varga.luca
• 0
1
vote
4
replies
589
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
3 months ago
kschecht
• 0
2
votes
8
replies
1.1k
views
biomaRt getLDS error
biomaRt
3 months ago
mark.dunning
▴ 20
1
vote
2
replies
871
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
4 months ago
Svitlana
▴ 10
0
votes
0
replies
293
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
5 months ago
Reese
• 0
0
votes
2
replies
484
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
5 months ago
landenshanie
▴ 40
0
votes
0
replies
254
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
5 months ago
Abiologist
• 0
1
vote
0
replies
341
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
6 months ago
Aleena
▴ 30
1
vote
3
replies
490
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 6 months ago by
James W. MacDonald
67k • written 6 months ago by
bas_work
▴ 30
2
votes
2
replies
711
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 6 months ago by
James W. MacDonald
67k • written 6 months ago by
sansan
• 0
0
votes
1
reply
409
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 7 months ago by
James W. MacDonald
67k • written 7 months ago by
Reeya
• 0
0
votes
1
reply
774
views
error in mapIds function
mapIds
biomaRt
updated 8 months ago by
Marcel Ramos
700 • written 8 months ago by
Regina
• 0
0
votes
2
replies
987
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
9 months ago
eefernan5
• 0
3
votes
3
replies
12k
views
How to find rsID with biomaRt in R
biomaRt
updated 9 months ago by
James W. MacDonald
67k • written 3.7 years ago by
Federica
▴ 10
0
votes
1
reply
412
views
biomaRt issue
biomaRt
updated 9 months ago by
Mike Smith
★ 6.6k • written 9 months ago by
Fariz
• 0
1
vote
5
replies
1.2k
views
BiomaRt download data error
biomaRt
updated 9 months ago by
Mike Smith
★ 6.6k • written 9 months ago by
Max Bone
• 0
6
votes
9
replies
1.7k
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 9 months ago by
alexander3
• 0 • written 9 months ago by
Amparo
• 0
1
vote
1
reply
1.2k
views
Error with biomaRt
biomaRt
updated 10 months ago by
Mike Smith
★ 6.6k • written 10 months ago by
goldenboy
• 0
4
votes
2
replies
763
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 10 months ago by
Guido Hooiveld
★ 4.1k • written 10 months ago by
sansan
• 0
2
votes
2
replies
999
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
10 months ago
bd2000
▴ 30
1
vote
0
replies
430
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
10 months ago
Benjamin
▴ 30
0
votes
2
replies
745
views
Problem with loading ensembl version 105.
biomaRt
10 months ago
RC
• 0
0
votes
1
reply
1.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 11 months ago by
James W. MacDonald
67k • written 11 months ago by
ai.yaku
• 0
0
votes
3
replies
917
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 11 months ago by
Robert Castelo
★ 3.4k • written 11 months ago by
bd2000
▴ 30
4
votes
12
replies
1.5k
views
Ensembl down???
biomaRt
11 months ago
bas_work
▴ 30
3
votes
2
replies
694
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
11 months ago
henrydionne
▴ 10
1
vote
2
replies
1.4k
views
How to find stop codons for a list of genes
stopcodon
biomaRt
11 months ago
Marek Gierlinski
▴ 30
0
votes
10
replies
1.3k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
12 months ago • updated 8 months ago
ScafioRuo
• 0
12
votes
10
replies
12k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 7 months ago by
juo5
• 0 • written 12 months ago by
Abhishek
▴ 20
0
votes
3
replies
731
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 12 months ago by
Gordon Smyth
51k • written 12 months ago by
Marilyn
• 0
1
vote
4
replies
970
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
13 months ago
andrew.b.kleist
▴ 10
7
votes
6
replies
5.9k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 13 months ago by
Marcel Ramos
700 • written 2.3 years ago by
Recep
▴ 20
0
votes
2
replies
625
views
Biomart - upstream region of 'coding'
biomaRt
updated 14 months ago by
Mike Smith
★ 6.6k • written 14 months ago by
andrebolerbarros
▴ 20
0
votes
0
replies
566
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
14 months ago
ali.oghabian
• 0
1
vote
5
replies
833
views
Errors with makeTxDbFromBiomart
biomaRt
updated 15 months ago by
James W. MacDonald
67k • written 15 months ago by
Jerina
▴ 10
3
votes
2
replies
1.8k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 15 months ago by
Guido Hooiveld
★ 4.1k • written 15 months ago by
Milan
▴ 10
0
votes
3
replies
1.1k
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 15 months ago by
Hervé Pagès
16k • written 15 months ago by
anavmar1
• 0
1
vote
2
replies
938
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
15 months ago
Miguel
• 0
0
votes
1
reply
830
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 16 months ago by
James W. MacDonald
67k • written 16 months ago by
cstorer
• 0
0
votes
1
reply
2.2k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 16 months ago by
Michael Love
42k • written 16 months ago by
Benjamin
▴ 30
0
votes
1
reply
1.2k
views
multiple filters in biomaRt
biomaRt
updated 17 months ago by
RuBBiT0
▴ 10 • written 17 months ago by
Yijing
• 0
2
votes
4
replies
1.3k
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
17 months ago
RuBBiT0
▴ 10
1
vote
2
replies
1.2k
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 17 months ago by
Mike Smith
★ 6.6k • written 17 months ago by
Yijing
• 0
0
votes
3
replies
789
views
BioMart Error message when pulling sequences
biomaRt
bioma
updated 18 months ago by
Mike Smith
★ 6.6k • written 18 months ago by
Luca
• 0
0
votes
3
replies
2.0k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 19 months ago by
nhaus
▴ 70
50 results • Page
1 of 1
Recent ...
Replies
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
daniela.gutierrezandrade
• 0
Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
by
dseauer
• 0
Thank you so much for all of your help! I really appreciate it!
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
by
Gordon Smyth
51k
Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
by
dseauer
• 0
Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…
Comment: Is it possible to parallelise saveHDF5SummarizedExperiment
by
Stefano Mangiola
▴ 20
Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…
Votes
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
biomaRt rnorvegicus_gene_ensembl not available anymore
A: Does edgeR need to specify reference group?
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