Showing : BiomaRt • reset
2
votes
4
replies
230
views
Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 19 days ago by ▴ 10
0
votes
5
replies
2.9k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 10 months ago by • 0
1
vote
1
reply
280
views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 7 weeks ago by ▴ 10
0
votes
1
reply
396
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 9 weeks ago by ★ 4.0k • written 4 months ago by • 0
5
votes
3
replies
575
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
updated 10 weeks ago by 68k • written 10 weeks ago by ▴ 10
0
votes
1
reply
301
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 4 months ago by ▴ 10
1
vote
3
replies
1.5k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 8 months ago by ▴ 30
1
vote
1
reply
711
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
3
replies
913
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 10 months ago by ★ 6.6k • written 10 months ago by ▴ 20
3
votes
5
replies
2.3k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 12 months ago by 68k • written 12 months ago by ▴ 10
0
votes
2
replies
2.0k
views
Error using useMart or useEnsembl
biomaRt
updated 12 months ago by 68k • written 12 months ago by • 0
0
votes
4
replies
2.2k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 12 months ago by 68k • written 12 months ago by • 0
3
votes
9
replies
2.4k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 11 months ago by • 0 • written 12 months ago by • 0
4
votes
9
replies
3.1k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 13 months ago by 68k • written 15 months ago by ▴ 20
0
votes
0
replies
1.1k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
15 months ago Ensembl_Jorge ▴ 10
0
votes
1
reply
913
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 16 months ago by ★ 6.6k • written 16 months ago by • 0
2
votes
2
replies
1.8k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
16 months ago 2044291597 • 0
1
vote
3
replies
2.0k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 16 months ago by 68k • written 23 months ago by ▴ 10
1
vote
4
replies
2.0k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 14 months ago by • 0 • written 17 months ago by • 0
1
vote
4
replies
1.6k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
17 months ago kschecht • 0
2
votes
8
replies
4.1k
views
biomaRt getLDS error
biomaRt
17 months ago mark.dunning ▴ 20
1
vote
2
replies
1.6k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
19 months ago Svitlana ▴ 10
0
votes
0
replies
668
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
19 months ago Reese • 0
0
votes
2
replies
1.1k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
20 months ago landenshanie ▴ 40
0
votes
0
replies
612
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
20 months ago Abiologist • 0
1
vote
0
replies
1.1k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
20 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
993
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 21 months ago by 68k • written 21 months ago by ▴ 30
2
votes
2
replies
1.8k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
1
reply
936
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
1
reply
2.0k
views
error in mapIds function
mapIds biomaRt
updated 23 months ago by 700 • written 23 months ago by • 0
0
votes
2
replies
1.6k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
23 months ago eefernan5 • 0
3
votes
3
replies
17k
views
How to find rsID with biomaRt in R
biomaRt
updated 23 months ago by 68k • written 4.9 years ago by ▴ 10
0
votes
1
reply
759
views
biomaRt issue
biomaRt
updated 23 months ago by ★ 6.6k • written 23 months ago by • 0
1
vote
5
replies
2.3k
views
BiomaRt download data error
biomaRt
updated 23 months ago by ★ 6.6k • written 23 months ago by • 0
6
votes
9
replies
4.4k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 24 months ago by • 0 • written 24 months ago by • 0
1
vote
1
reply
2.3k
views
Error with biomaRt
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
4
votes
2
replies
1.4k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 2.0 years ago by ★ 4.1k • written 2.0 years ago by • 0
2
votes
2
replies
1.6k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
2.0 years ago bd2000 ▴ 30
1
vote
0
replies
836
views
News: Ensembl 111 has been released
Ensembl biomaRt
2.0 years ago Benjamin ▴ 30
0
votes
2
replies
1.3k
views
Problem with loading ensembl version 105.
biomaRt
2.1 years ago RC • 0
0
votes
1
reply
2.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
3
replies
2.1k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 2.1 years ago by ★ 3.4k • written 2.1 years ago by ▴ 30
4
votes
12
replies
2.7k
views
Ensembl down???
biomaRt
2.2 years ago • updated 2.1 years ago bas_work ▴ 30
3
votes
2
replies
1.3k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.2 years ago henrydionne ▴ 10
1
vote
2
replies
2.8k
views
How to find stop codons for a list of genes
stopcodon biomaRt
2.2 years ago Marek Gierlinski ▴ 30
0
votes
10
replies
2.0k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.2 years ago • updated 23 months ago ScafioRuo • 0
12
votes
10
replies
16k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 22 months ago by • 0 • written 2.2 years ago by ▴ 20
0
votes
3
replies
1.3k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
1
vote
4
replies
1.6k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.3 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
9.5k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.3 years ago by 700 • written 3.4 years ago by ▴ 20
1,084 results • Page 1 of 22
Recent ...
Replies
Answer: Bile acid analysis with limpa by Gordon Smyth 53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard mass spec data, then limpa …
Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0
It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…
Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0
To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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