Showing : BiomaRt • reset
2
votes
4
replies
301
views
Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 5 weeks ago by ▴ 10
0
votes
5
replies
3.1k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 10 months ago by • 0
1
vote
2
replies
474
views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 10 weeks ago by ▴ 10
0
votes
1
reply
425
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 12 weeks ago by ★ 4.0k • written 5 months ago by • 0
5
votes
3
replies
690
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
updated 3 months ago by 68k • written 3 months ago by ▴ 10
0
votes
1
reply
408
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 4 months ago by ▴ 10
1
vote
3
replies
1.6k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 9 months ago by ▴ 30
1
vote
1
reply
734
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
3
replies
960
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 10 months ago by ★ 6.6k • written 10 months ago by ▴ 20
3
votes
5
replies
2.5k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 13 months ago by 68k • written 13 months ago by ▴ 10
0
votes
2
replies
2.1k
views
Error using useMart or useEnsembl
biomaRt
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
4
replies
2.4k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 13 months ago by 68k • written 13 months ago by • 0
3
votes
9
replies
2.6k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 12 months ago by • 0 • written 13 months ago by • 0
4
votes
9
replies
3.2k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 14 months ago by 68k • written 15 months ago by ▴ 20
0
votes
0
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1.2k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
16 months ago Ensembl_Jorge ▴ 10
0
votes
1
reply
955
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 16 months ago by ★ 6.6k • written 16 months ago by • 0
2
votes
2
replies
1.9k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
16 months ago 2044291597 • 0
1
vote
3
replies
2.1k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 17 months ago by 68k • written 2.0 years ago by ▴ 10
1
vote
4
replies
2.1k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 15 months ago by • 0 • written 17 months ago by • 0
1
vote
4
replies
1.7k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
18 months ago kschecht • 0
2
votes
8
replies
4.2k
views
biomaRt getLDS error
biomaRt
18 months ago mark.dunning ▴ 20
1
vote
2
replies
1.6k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
19 months ago Svitlana ▴ 10
0
votes
0
replies
684
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
20 months ago Reese • 0
0
votes
2
replies
1.1k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
21 months ago • updated 20 months ago landenshanie ▴ 40
0
votes
0
replies
641
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
21 months ago Abiologist • 0
1
vote
0
replies
1.2k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
21 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
1.0k
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 22 months ago by 68k • written 22 months ago by ▴ 30
2
votes
2
replies
1.9k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
1
reply
970
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
1
reply
2.0k
views
error in mapIds function
mapIds biomaRt
updated 23 months ago by 700 • written 23 months ago by • 0
0
votes
2
replies
1.6k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
24 months ago eefernan5 • 0
3
votes
3
replies
17k
views
How to find rsID with biomaRt in R
biomaRt
updated 2.0 years ago by 68k • written 4.9 years ago by ▴ 10
0
votes
1
reply
778
views
biomaRt issue
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
1
vote
5
replies
2.4k
views
BiomaRt download data error
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by • 0
6
votes
9
replies
4.5k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 2.0 years ago by • 0 • written 2.0 years ago by • 0
1
vote
1
reply
2.3k
views
Error with biomaRt
biomaRt
updated 2.1 years ago by ★ 6.6k • written 2.1 years ago by • 0
4
votes
2
replies
1.5k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
2
votes
2
replies
1.7k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
2.1 years ago bd2000 ▴ 30
1
vote
0
replies
857
views
News: Ensembl 111 has been released
Ensembl biomaRt
2.1 years ago Benjamin ▴ 30
0
votes
2
replies
1.4k
views
Problem with loading ensembl version 105.
biomaRt
2.1 years ago RC • 0
0
votes
1
reply
2.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
3
replies
2.2k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 2.2 years ago by ★ 3.4k • written 2.2 years ago by ▴ 30
4
votes
12
replies
2.8k
views
Ensembl down???
biomaRt
2.2 years ago bas_work ▴ 30
3
votes
2
replies
1.3k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.2 years ago henrydionne ▴ 10
1
vote
2
replies
2.9k
views
How to find stop codons for a list of genes
stopcodon biomaRt
2.2 years ago Marek Gierlinski ▴ 30
0
votes
10
replies
2.1k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.2 years ago • updated 23 months ago ScafioRuo • 0
12
votes
10
replies
17k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 23 months ago by • 0 • written 2.3 years ago by ▴ 20
0
votes
3
replies
1.3k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.3 years ago by 53k • written 2.3 years ago by • 0
1
vote
4
replies
1.6k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.4 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
9.8k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.3 years ago by 700 • written 3.5 years ago by ▴ 20
1,084 results • Page 1 of 22
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Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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