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Chromosome
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0
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2
replies
1.6k
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How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
2.7 years ago
Liliian
• 0
3
votes
5
replies
2.9k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
jon.klonowski
▴ 40
5
votes
4
replies
17k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 2.5 years ago by
James W. MacDonald
68k • written 5.4 years ago by
Mahan
• 0
0
votes
4
replies
1.2k
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
Bine
▴ 50
0
votes
2
replies
1.3k
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
knholm
• 0
0
votes
0
replies
927
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
5.7 years ago
heiko_kin
▴ 60
1
vote
1
reply
831
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 5.8 years ago by
swbarnes2
★ 1.4k • written 5.8 years ago by
missmoparker
• 0
0
votes
1
reply
1.2k
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
xchen8
• 0
2
votes
3
replies
3.0k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 7.8 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Nathan Sheffield
▴ 10
1
vote
5
replies
3.3k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 8.8 years ago by
bernatgel
▴ 150 • written 8.9 years ago by
dulunar
▴ 10
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
Sean Davis
21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols
by
Sean Davis
21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR?
by
petergrahamclark
▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaasocissalpc
• 0
Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…
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Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
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