Bioconductor Chromosome

Showing : Chromosome • reset

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954

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gene chromosome proteincodinggene

20 months ago Liliian • 0

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2.3k

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GenomicRanges split chromosome TxDb

updated 3.0 years ago by Hervé Pagès 16k • written 3.0 years ago by jon.klonowski ▴ 40

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12k

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SNP rs id Biomart Chromosome coordinates

updated 17 months ago by James W. MacDonald 67k • written 4.4 years ago by Mahan • 0

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942

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Chromosome Annotation

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by Bine ▴ 50

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1.0k

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tximport GCF feature table parsing error chromosome

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by knholm • 0

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677

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RefSeq Chromosome Mutalyzer

4.7 years ago heiko_kin ▴ 60

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626

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edgeR chromosome RNAseq

updated 4.7 years ago by swbarnes2 ★ 1.4k • written 4.7 years ago by missmoparker • 0

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952

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homo sapiens chromosome

updated 6.6 years ago by James W. MacDonald 67k • written 6.6 years ago by xchen8 • 0

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2.3k

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bsgenome chromosome reference genome

updated 6.8 years ago by Hervé Pagès 16k • written 6.8 years ago by Nathan Sheffield ▴ 10

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2.8k

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Gviz chromosome ideogram

updated 7.8 years ago by bernatgel ▴ 150 • written 7.8 years ago by dulunar ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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