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Chromosome
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2
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1.0k
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How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
22 months ago
Liliian
• 0
3
votes
5
replies
2.4k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 3.2 years ago by
Hervé Pagès
16k • written 3.2 years ago by
jon.klonowski
▴ 40
5
votes
4
replies
13k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 19 months ago by
James W. MacDonald
68k • written 4.5 years ago by
Mahan
• 0
0
votes
4
replies
968
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
Bine
▴ 50
0
votes
2
replies
1.1k
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
knholm
• 0
0
votes
0
replies
716
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.9 years ago
heiko_kin
▴ 60
1
vote
1
reply
648
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 4.9 years ago by
swbarnes2
★ 1.4k • written 4.9 years ago by
missmoparker
• 0
0
votes
1
reply
970
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
xchen8
• 0
2
votes
3
replies
2.5k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Nathan Sheffield
▴ 10
1
vote
5
replies
2.9k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.9 years ago by
bernatgel
▴ 150 • written 8.0 years ago by
dulunar
▴ 10
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Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.6k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Comment: Overcoming confounding in batch effect correction
by
mimi
• 0
https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Votes
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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