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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
written 2.8 years ago by ▴ 110
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2
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564
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GBCC2025: New Scholarship Opportunities Available!
Community Conference GBCC2025 Bioconductor
updated 3 months ago by • 0 • written 6 months ago by ▴ 110
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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
9 months ago Maria Doyle ▴ 110
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488
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
10 months ago Maria Doyle ▴ 110
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289
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
10 months ago Maria Doyle ▴ 110
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
10 months ago Maria Doyle ▴ 110
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 2.6 years ago by ▴ 110
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563
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
13 months ago Maria Doyle ▴ 110
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522
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
14 months ago Maria Doyle ▴ 110
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
15 months ago Maria Doyle ▴ 110
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4
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
updated 7 weeks ago by • 0 • written 15 months ago by ▴ 110
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
15 months ago Maria Doyle ▴ 110
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548
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
15 months ago Maria Doyle ▴ 110
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729
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
16 months ago Maria Doyle ▴ 110
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
16 months ago Maria Doyle ▴ 110
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
17 months ago Maria Doyle ▴ 110
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
17 months ago Maria Doyle ▴ 110
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513
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
18 months ago Maria Doyle ▴ 110
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
18 months ago Maria Doyle ▴ 110
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News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
19 months ago Maria Doyle ▴ 110
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
21 months ago Maria Doyle ▴ 110
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News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
2.4 years ago Maria Doyle ▴ 110
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
2.5 years ago Maria Doyle ▴ 110
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
2.6 years ago Maria Doyle ▴ 110
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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2.6 years ago Maria Doyle ▴ 110
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
2.6 years ago Maria Doyle ▴ 110
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 16 months ago by • 0 • written 2.8 years ago by ▴ 110
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News: Bioconductor call for events!
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2.8 years ago Maria Doyle ▴ 110
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
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News: Seeking members for BioC2023 organizing committee
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2.9 years ago Maria Doyle ▴ 110
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News: Seeking Outreachy interns and project proposals
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2.9 years ago Maria Doyle ▴ 110
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News: Translation Hackathon (community event) announcement
event translation community
3.4 years ago kozo.nishida • 0
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Job: Bioconductor Community Manager
Community Teaching Bioconductor
3.6 years ago • updated 3.5 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board -- Deadline this Friday February 25
bioconductoroversight community CAB
3.8 years ago shepherl 4.2k
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News: Join the Bioconductor Community Advisory Board
bioconductoroversight community CAB
3.9 years ago • updated 3.8 years ago shepherl 4.2k
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News: Call for Community Volunteered Package Reviewers
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4.4 years ago shepherl 4.2k
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News: Nominations for Bioconductor Technical Advisory Board are open
community Bioconductor
4.6 years ago Charlotte Soneson ▴ 170
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News: Community engagement, outreach, and diversity award
awards bioc2021 recognition community Bioconductor
4.6 years ago shepherl 4.2k
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News: New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight news community BiocVersion
4.7 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
bioconductoroversight community BiocVersion news
written 4.9 years ago by ▴ 1000
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News: Community engagement and outreach award
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News: Bioconductor Community Advisory Board Members
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5.7 years ago Matthew Ritchie ▴ 1000
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News: Bioconductor Community Advisory Board Nominees
news community bioconductor oversight News
updated 5.8 years ago by 21k • written 5.8 years ago by ▴ 1000
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News: Results: Bioconductor Community Survey
community feedback News
5.9 years ago Matthew Ritchie ▴ 1000
3
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News: Bioconductor Community Survey
feedback community News
6.2 years ago Matthew Ritchie ▴ 1000
45 results • Page 1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to shepherl 4.2k
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
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