Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DADA2
•
reset
0
votes
0
replies
329
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
6 months ago
Sara
• 0
0
votes
0
replies
335
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
6 months ago
Sara
• 0
2
votes
2
replies
429
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
8 months ago
GlycineMax
• 0
0
votes
14
replies
2.0k
views
Trouble downloading dada2
dada
dada2
14 months ago
elliottchon97
• 0
27
votes
13
replies
16k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 14 months ago by
Yoon Young
• 0 • written 2.9 years ago by
lh290
▴ 60
0
votes
3
replies
1.0k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 16 months ago by
Erik Wright
▴ 150 • written 16 months ago by
Nelli
• 0
0
votes
2
replies
826
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
20 months ago
anasjamshed1994
• 0
1
vote
3
replies
1.2k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 2.1 years ago by
shepherl
3.8k • written 2.1 years ago by
safiq713
• 0
0
votes
4
replies
1.8k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.3 years ago
ymtan
• 0
0
votes
0
replies
762
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
2.7 years ago
Manijeh
• 0
0
votes
0
replies
976
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
2.7 years ago
Yoan
• 0
0
votes
5
replies
2.2k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.9 years ago by
fabian.roger08
▴ 10 • written 4.2 years ago by
fabian.roger
• 0
0
votes
1
reply
769
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 2.9 years ago by
Michael Love
41k • written 2.9 years ago by
GlycineMax
• 0
4
votes
8
replies
3.8k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.0 years ago by
Axel Klenk
★ 1.0k • written 3.0 years ago by
mschmidt
▴ 10
0
votes
0
replies
954
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.1 years ago
anrongloh
• 0
1
vote
1
reply
3.6k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Daniel
• 0
0
votes
0
replies
1.0k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.1 years ago
beginner87
• 0
0
votes
1
reply
1.9k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
mafusa20
• 0
0
votes
1
reply
998
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
gradypierroz
• 0
4
votes
4
replies
2.5k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.2 years ago by
benjamin.j.callahan
▴ 50 • written 6.2 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.7k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 6.7 years ago by
daniel.vantwisk
▴ 50 • written 6.7 years ago by
rggriggs
• 0
1
vote
7
replies
17k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 6.8 years ago by
jiangjing_ing
• 0 • written 6.9 years ago by
navlern
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards
• All
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Locations
• All
United States,
just now
Ireland,
2 minutes ago
France,
12 minutes ago
Canada,
24 minutes ago
Wageningen University, Wageningen, the Netherlands,
30 minutes ago
Traffic: 1013 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6