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DGELIst
•
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0
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2
replies
738
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How to make DGEList and design matrix by edgeR package
DGEList
edgeR
20 months ago
prity6459
• 0
2
votes
2
replies
1.0k
views
Inccorect group number in DGEList
edgeR
Bioconductor
Dseq2
dgelist
updated 3.0 years ago by
Gordon Smyth
53k • written 3.0 years ago by
Fiona
• 0
1
vote
1
reply
1.4k
views
Optimal edgeR design for a single-factor experiment
factors
edgeR
setup
DGELIst
updated 4.6 years ago by
Gordon Smyth
53k • written 4.6 years ago by
Alex
• 0
0
votes
2
replies
2.5k
views
create DGElist Object
edger
DGElist
updated 6.7 years ago by
Gordon Smyth
53k • written 6.7 years ago by
naser.sadri
• 0
0
votes
4
replies
2.2k
views
Error in RnaSeqGeneEdgeRQL
dgelist
edger
RnaSeqGeneEdgeRQL
updated 7.4 years ago by
Gordon Smyth
53k • written 7.4 years ago by
Kevin
• 0
1
vote
4
replies
3.0k
views
edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
edgeR
summarizedexperiment
dgelist
7.7 years ago
aljoscha.leusmann
• 0
0
votes
0
replies
1.4k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
7.8 years ago
Larry K.
• 0
0
votes
1
reply
2.8k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 7.8 years ago by
Gordon Smyth
53k • written 7.8 years ago by
belmore
• 0
3
votes
3
replies
4.5k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger
DGEList
org.hs.eg.db
gene annotation
updated 4.3 years ago by
IIart.hubII
• 0 • written 8.1 years ago by
svlachavas
▴ 840
0
votes
2
replies
3.9k
views
Design of 'group' object in DGElist function
egder
dgelist
group
rnaseq
updated 8.1 years ago by
Aaron Lun
★ 29k • written 8.1 years ago by
fawazfebin
▴ 60
2
votes
4
replies
4.2k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 8.5 years ago by
Gordon Smyth
53k • written 8.5 years ago by
alakatos
▴ 130
4
votes
6
replies
3.3k
views
How to carry out differential gene expression starting with a table of TMM normalised values without access to the raw reads?
edger
raw reads
TMM normalised values
DGEList
differential gene expression
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
benedict.ng
▴ 30
3
votes
7
replies
7.8k
views
edgeR subsetting DGEList by column/sample
edger
subsetting
dgelist
updated 9.4 years ago by
Gordon Smyth
53k • written 9.4 years ago by
mnaymik
▴ 10
1
vote
4
replies
22k
views
edgeR: non-unique values when setting 'row.names' - but the row names are unique!!!
edgeR
row.names
DGEList
10.9 years ago
ccheung
• 0
14 results • Page
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Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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Gordon Smyth
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Hervé Pagès
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Dario Strbenac
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