Showing : Deconvolution • reset
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 6.6 years ago by 13k • written 6.6 years ago by ▴ 120
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1.2k
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
7.0 years ago carleshf ▴ 10
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4
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742
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 3.3 years ago by 37k • written 3.3 years ago by ▴ 30
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1
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572
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
4.3 years ago WouterDeCoster ▴ 130
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2
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496
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 deconvolution rnaseq
updated 3.9 years ago by 37k • written 3.9 years ago by • 0
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449
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
4.3 years ago casey.rimland ▴ 140
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322
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
2.1 years ago marcin.bazyliszek • 0
2
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2
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263
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
3 months ago Hasan Alanya • 0
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2
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258
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 2.3 years ago by 45k • written 2.3 years ago by • 0
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1
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238
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
23 months ago kavator ▴ 20
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232
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Best deconvolution method
Deconvolution
6 months ago Barista • 0
11 results • Page 1 of 1
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Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Hi Michael, I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
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Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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