Bioconductor DifferentialMethylation

Showing : DifferentialMethylation • reset

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439

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limma probe DMRcate GenomicRanges DifferentialMethylation

6 months ago jamiecatalano2 • 0

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1.1k

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chipseq DifferentialMethylation DESeq2

updated 21 months ago by Michael Love 43k • written 22 months ago by rebw25 • 0

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1.1k

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by titangerd • 0

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888

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DifferentialMethylation limma

written 2.3 years ago by Diren • 0

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hiAnnotator bsseq DifferentialMethylation edgeR RRBSdata

3.5 years ago Mageiros • 0

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2.4k

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DifferentialMethylation RRBSdata edgeR

updated 3.5 years ago by Gordon Smyth 53k • written 3.6 years ago by Mageiros • 0

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1.3k

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DifferentialMethylation MethylationArrayData

updated 4.4 years ago by Basti ▴ 780 • written 4.5 years ago by kwaku.anim • 0

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1.2k

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DifferentialMethylation ChAMP champ.DMP

updated 5.0 years ago by Yuan Tian ▴ 290 • written 5.0 years ago by Ricardo • 0

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Comment: Error installing Seqinfo by shepherl 4.2k

Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week

Comment: APAlyzer by shepherl 4.2k

We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

Comment: Getting a large intercept with DESeq2 by James W. MacDonald 68k

As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…

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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Issues with downloading biomaRt - SeqInfo and S4 Vectors

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

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