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Dispersion
•
reset
2
votes
2
replies
3.6k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
22 months ago
Linton
• 0
0
votes
3
replies
1.3k
views
Dispersion outliers genes
Dispersion
DESeq2
2.5 years ago
raya.fai
▴ 60
1
vote
1
reply
1.3k
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Julia
▴ 10
1
vote
2
replies
2.0k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
4.0 years ago • updated 3.9 years ago
m.glymenaki
• 0
4
votes
5
replies
2.1k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
4.4 years ago
Manal
• 0
0
votes
0
replies
820
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
4.2k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 4.8 years ago by
Michael Love
43k • written 5.1 years ago by
Kelen
▴ 10
0
votes
2
replies
1.3k
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 5.7 years ago by
Gordon Smyth
53k • written 5.8 years ago by
Ruben.wauters
• 0
3
votes
3
replies
2.5k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 6.4 years ago by
onlychainsaw2019
• 0 • written 6.8 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
2.3k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
6.6 years ago • updated 6.5 years ago
fiona.dick91
▴ 60
0
votes
5
replies
3.2k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
6.8 years ago
eva-m.petit
• 0
0
votes
4
replies
2.0k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.9k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 7.4 years ago by
Ryan C. Thompson
★ 7.9k • written 7.4 years ago by
Mr.RB
▴ 20
8
votes
12
replies
13k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 7.4 years ago by
Aaron Lun
★ 29k • written 7.4 years ago by
Mr.RB
▴ 20
0
votes
13
replies
7.9k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
7.6 years ago
Frederik Ziebell
▴ 30
0
votes
11
replies
2.8k
views
Strange dispersion plot
deseq2
dispersion
7.7 years ago
Moose123
• 0
5
votes
7
replies
8.6k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 8.1 years ago by
Bernd Klaus
▴ 610 • written 8.1 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.4k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 9.1 years ago by
Ryan C. Thompson
★ 7.9k • written 9.1 years ago by
nancyjwahl7
• 0
4
votes
3
replies
2.2k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.8k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 9.4 years ago by
Aaron Lun
★ 29k • written 9.4 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.5k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 9.4 years ago by
Gordon Smyth
53k • written 9.4 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.6k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 9.8 years ago by
Michael Love
43k • written 9.8 years ago by
hans
• 0
3
votes
2
replies
4.7k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
10.3 years ago
meeta.mistry
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
Kevin Blighe
★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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