Showing : FlowCytometry • reset
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News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.7 years ago Greg Finak ▴ 150
2
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1
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916
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How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
18 months ago aguirre ▴ 20
2
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9
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1.5k
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Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 20 months ago by ▴ 350 • written 20 months ago by • 0
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2
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1.2k
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openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
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1
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1.5k
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flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 9.4 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
1
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629
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 19 months ago by ★ 3.9k • written 19 months ago by • 0
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6
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2.1k
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.3 years ago by • 0 • written 8.2 years ago by • 0
0
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1
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1.9k
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.2 years ago Jiang, Mike ★ 1.3k
0
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2
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2.0k
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Scaling fcs files with flowCore
flowCore flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
0
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1
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1.2k
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Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
7.3 years ago mo • 0
0
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1
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1.1k
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[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by • 0
0
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1
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1.1k
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[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.1 years ago fabrizio.benedetti.82 • 0
0
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0
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558
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How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
18 months ago Dennis.hinkel • 0
0
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0
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370
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Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
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0
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704
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Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
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0
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290
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
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0
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564
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Reducing/sampling number of FCS events
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
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0
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465
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
19 months ago Noël • 0
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0
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1.2k
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FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
11.3 years ago Pieter Coussement ▴ 30
0
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124
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Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
8 weeks ago taylor.witte • 0
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0
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1.3k
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Re: FlowStats help
flowclust opencyto flowcytometry
9.2 years ago Jiang, Mike ★ 1.3k
0
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2
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2.0k
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xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
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1
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1.3k
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samples are reordered in read.flowSet
flowcore flowcytometry
8.8 years ago Jiang, Mike ★ 1.3k
0
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1
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1.4k
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read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
8.3 years ago e.bestion • 0
0
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1
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1.2k
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FlowViz package question
flowviz flowcytometry
8.2 years ago Jiang, Mike ★ 1.3k
25 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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