Bioconductor Fold Change

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7.4k

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R deseq2 edger differential gene expression fold change

updated 3.5 years ago by ATpoint ★ 5.0k • written 7.3 years ago by Beginner ▴ 60

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3.1k

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diffBind Fold Change

updated 4.5 years ago by Joe Nicholas • 0 • written 6.8 years ago by joseluis.ruiz • 0

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1.9k

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edger differential expression genes fold change

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by ilovesuperheroes1993 • 0

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1.4k

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mfuzz fold change log2 STANDARDISATION

7.4 years ago prakashpandey1111 • 0

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1.9k

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ballgown stattest fold change

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by Arindam ▴ 80

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1.9k

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logfc limma fold change

updated 9.2 years ago by Gordon Smyth 53k • written 9.2 years ago by Claudia ▴ 10

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3.1k

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edgeR DE analysis fold change cpm

updated 9.2 years ago by Ryan C. Thompson ★ 7.9k • written 9.2 years ago by Sara ▴ 20

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Comment: Save the Date for EuroBioC2026 in Turku! by jamesbennettki • 0

That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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