Bioconductor Fold Change

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R deseq2 edger differential gene expression fold change

updated 2.7 years ago by ATpoint ★ 4.6k • written 6.5 years ago by Beginner ▴ 60

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diffBind Fold Change

updated 3.6 years ago by Joe Nicholas • 0 • written 5.9 years ago by joseluis.ruiz • 0

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1.6k

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edger differential expression genes fold change

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by ilovesuperheroes1993 • 0

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1.1k

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mfuzz fold change log2 STANDARDISATION

6.5 years ago prakashpandey1111 • 0

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ballgown stattest fold change

updated 6.8 years ago by James W. MacDonald 67k • written 6.8 years ago by Arindam ▴ 80

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logfc limma fold change

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by Claudia ▴ 10

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edgeR DE analysis fold change cpm

updated 8.4 years ago by Ryan C. Thompson ★ 7.9k • written 8.4 years ago by Sara ▴ 20

7 results • Page 1 of 1

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Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

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Teacher to dsull ▴ 40