Bioconductor Fold Change

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7.8k

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R deseq2 edger differential gene expression fold change

updated 3.8 years ago by ATpoint ★ 5.0k • written 7.6 years ago by Beginner ▴ 60

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3.2k

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diffBind Fold Change

updated 4.8 years ago by Joe Nicholas • 0 • written 7.1 years ago by joseluis.ruiz • 0

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2.0k

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edger differential expression genes fold change

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by ilovesuperheroes1993 • 0

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1.5k

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mfuzz fold change log2 STANDARDISATION

7.6 years ago prakashpandey1111 • 0

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2.0k

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ballgown stattest fold change

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by Arindam ▴ 80

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1.9k

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logfc limma fold change

updated 9.4 years ago by Gordon Smyth 53k • written 9.4 years ago by Claudia ▴ 10

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3.3k

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edgeR DE analysis fold change cpm

updated 9.5 years ago by Ryan C. Thompson ★ 7.9k • written 9.5 years ago by Sara ▴ 20

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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k