Showing : Fold Change • reset
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 2.6 years ago by ★ 4.5k • written 6.4 years ago by ▴ 60
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diffBind report Fold scale
diffBind Fold Change
updated 3.6 years ago by • 0 • written 5.9 years ago by • 0
2
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4
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1.5k
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Majority upregulated genes in edgeR
edger differential expression genes fold change
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
6.4 years ago prakashpandey1111 • 0
1
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1.5k
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What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 6.7 years ago by 67k • written 6.7 years ago by ▴ 80
0
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1.7k
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Question on fold change calculation for microarray data
logfc limma fold change
updated 8.2 years ago by 51k • written 8.2 years ago by ▴ 10
2
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7
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2.7k
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About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 8.3 years ago by ★ 7.9k • written 8.3 years ago by ▴ 20
7 results • Page 1 of 1
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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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