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1.4k

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limma RNAseq foldchange

5.2 years ago • updated 5.1 years ago susana.amaral.teixeira ▴ 20

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4.8k

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DifferentialExpression DEA FC FoldChange edgeR

2.7 years ago zhxiaokang ▴ 20

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1.4k

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limma microarray foldchange DEG GEO

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Pietro ▴ 40

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1.1k

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sign FoldChange DESeq2 reference

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by yampolsk • 0

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1.6k

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DESeq2 TPM Foldchange

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by dadca596 • 0

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467

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StatisticalMethod FoldChange edgeR RNASeq

4 months ago Sabiha ▴ 20

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2.3k

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EdgeR RNAseq Foldchange

updated 2.8 years ago by swbarnes2 ★ 1.3k • written 2.8 years ago by najib • 0

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821

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FoldChange DiffBind lfcShrink Cut&TagData

10 months ago bhandary.8590 ▴ 20

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1.4k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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2.3k

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FoldChange DiffBind lfcShrink

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by bhandary.8590 ▴ 20

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2.3k

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foldchange topGO DifferentialExpression enrichment

updated 3.5 years ago by Gordon Smyth 50k • written 3.5 years ago by lessismore ▴ 20

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898

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

12 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10

Thanks for your thoughtful and detailed comment, Gordon

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

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Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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