Bioconductor GFF3

Showing : GFF3 • reset

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dexseq python gtf gff3 annotation

4.5 years ago Raito92 ▴ 60

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2.2k

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annotation gff3 gff genome

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by mictadlo ▴ 10

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1.1k

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parclip bedtools bed files gff3

6.8 years ago linuxborg2 • 0

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4.9k

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txdb gff3 polycistronic transcript

7.0 years ago Piotr Gawronski • 0

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3.4k

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GenomicFeatures GFF3

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Dario Strbenac ★ 1.5k

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3.6k

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AnnotationHub Gencode GFF3 FASTA News

9.2 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k