Bioconductor GFF3

Showing : GFF3 • reset

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dexseq python gtf gff3 annotation

5.6 years ago • updated 5.5 years ago Raito92 ▴ 60

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2.7k

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annotation gff3 gff genome

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.2 years ago by mictadlo ▴ 10

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1.4k

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parclip bedtools bed files gff3

7.8 years ago linuxborg2 • 0

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5.4k

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txdb gff3 polycistronic transcript

8.0 years ago Piotr Gawronski • 0

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4.0k

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GenomicFeatures GFF3

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by Dario Strbenac ★ 1.6k

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4.4k

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AnnotationHub Gencode GFF3 FASTA News

10.2 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Answer: How can I correctly use phyloseq with Docker? by Kevin Blighe ★ 4.0k

The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …

Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by Kevin Blighe ★ 4.0k

Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…

Answer: Install old version of DESeq2 by Kevin Blighe ★ 4.0k

The Dockerfile that you have provided is appropriate for installing DESeq2 and apeglm from Bioconductor release 3.10, which corresponds to …

Answer: Guidance Requested on GCN Network Analysis and Module Enrichment in R by Kevin Blighe ★ 4.0k

The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…

Answer: ORFik: spliced 5utr regions by Kevin Blighe ★ 4.0k

Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…

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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

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