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GFF3
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reset
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1.8k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.6 years ago • updated 4.5 years ago
Raito92
▴ 60
2
votes
2
replies
2.2k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
mictadlo
▴ 10
0
votes
0
replies
1.1k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.8 years ago
linuxborg2
• 0
2
votes
2
replies
5.0k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
7.0 years ago
Piotr Gawronski
• 0
9
votes
3
replies
3.4k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
3.7k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.2 years ago
Sonali Arora
▴ 390
6 results • Page
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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